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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 37 38 -
BioSample 135 135 -
Gene 10,615 10,615 -
Identical Protein Groups 137,044 137,044 -
Nucleotide 5,079 5,090 87
PMC 348 348 -
Protein 206,994 206,994 -
SRA 144 144 -
Structure 2 2 -
Taxonomy 4 4 -

Agrobacterium vitis

Taxonomy ID: 373 (for references in articles please use NCBI:txid373)
current name
Agrobacterium vitis  Ophel and Kerr 1990
type strain of Agrobacterium vitis: ATCC : 49767 , CIP : 105853 , HAMBI : 1817 , ICMP : 10752 , IFO : 15140 , JCM : 21033 , BCCM/LMG : 8750 , NBRC : 15140 , NCPPB : 3554 , personal : K309 , IAM : 14140 , CGNCC : 1.7033
includes:
Agrobacterium vitis plasmid pTiAB4
homotypic synonym:
Rhizobium vitis  (Ophel and Kerr 1990) Young et al. 2001
Allorhizobium vitis  (Ophel and Kerr 1990) Mousavi et al. 2016
homotypic synonym:
Allorhizobium vitis  (Ophel and Kerr 1990) Mousavi et al. 2016 emend. Kuzmanović et al. 2022 in  in  [List of Changes in Taxonomic Opinion No. 37 (2023)] , [Kuzmanović N et al. (2022b)]
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym Agrobacterium biovar 3
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium

Comments and References:
List of Changes in Taxonomic Opinion No. 37 (2023) , Pubmed: abstract
Oren, A., and Göker, M. "Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 37." Int. J. Syst. Evol. Microbiol. 73(1):005696.
Kuzmanović N et al. (2022b) , doi: 10.1186/s12864-022-08662-x , Pubmed: abstract
Kuzmanović, N., Biondi, E., Overmann, J., Puławska, J., Verbarg, S., Smalla, K., and Lassalle, F. "Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis)." BMC Genomics (2022) 23(1):462.
Gan HM et al. (2018)
Gan, H.M., Lee, M.V.J., and Savka, M.A. "High-quality draft genome sequence of the type strain of Allorhizobium vitis, the primary causal agent of grapevine crown gall." Microbiol. Resour. Announc. (2018) 7(9):e01045-18.
Mousavi SA et al. (2015)
Mousavi, S.A., Willems, A., Nesme, X., de Lajudie, P., and Lindstrom, K. "Revised phylogeny of Rhizobiaceae: Proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations." Syst. Appl. Microbiol. (2015) 38:84-90.
Ophel K & Kerr A (1990)
Ophel, K., and Kerr, A. "Agrobacterium vitis sp. nov. for strains of Agrobacterium biovar 3 from grapevines." Int. J. Syst. Bacteriol. (1990) 40:236-241. [No PubMed record available.]
VALIDATION LIST No. 172 (2016) (Allorhizobium vitis)
Validation List No. 172: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2016) 66:4299-4305.
Young JM et al. (1996)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [N.B.: reference with type strain information]
Young JM et al. (2001)
Young, J.M., Kuykendall, L.D., Martinez -Romero, E., Kerr, A., and Sawada, H. "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudieet al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis." Int. J. Syst. Evol. Microbiol. (2001) 51:89-103.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Agrobacterium vitis NCPPB 3554 organism-specific BioCyc
Agrobacterium vitis NCPPB 3554 organism-specific BioCyc
Agrobacterium vitis NCPPB 3554 organism-specific BioCyc
Agrobacterium vitis NCPPB 3554 organism-specific BioCyc
Rhizobium vitis (Ophel and Kerr 1990) Young et al. 2001 taxonomy/phylogenetic Encyclopedia of life
GOLD: 20 Organisms organism-specific Genomes On Line Database
Agrobacterium vitis culture/stock collections Global Catalogue of Microorganisms
8003624136: Agrobacterium vitis CG957 organism-specific Integrated Microbial Genomes
8003575593: Agrobacterium vitis V80/94 organism-specific Integrated Microbial Genomes
2987466894: Agrobacterium vitis AB3 organism-specific Integrated Microbial Genomes
2987461459: Agrobacterium vitis AB4 organism-specific Integrated Microbial Genomes
2899834825: Agrobacterium vitis Rr4 organism-specific Integrated Microbial Genomes
2873468275: Agrobacterium vitis S00131 organism-specific Integrated Microbial Genomes
2902115149: Agrobacterium vitis Ni1 organism-specific Integrated Microbial Genomes
2728368991: Agrobacterium vitis NCPPB 3554 organism-specific Integrated Microbial Genomes
2855527181: Agrobacterium vitis V80/94 organism-specific Integrated Microbial Genomes
2864993140: Agrobacterium vitis S00303 organism-specific Integrated Microbial Genomes
Agrobacterium vitis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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