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Taxonomy browser (Brassica rapa)

Brassica rapa

Taxonomy ID: 3711 (for references in articles please use NCBI:txid3711)
Scientific name: Brassica rapa L., 1753
Genbank common name: field mustard
NCBI BLAST® name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
   Entrez records   
Database name Subtree links Direct links
Nucleotide 565,646 178,182
Protein 146,455 144,441
Structure 5 3
Genome 1 1
Popset 255 240
GEO Datasets 889 763
UniGene 14,497 14,497
PubMed Central 3,477 2,810
Gene 51,878 51,779
SRA Experiments 2,964 2,306
Identical Protein Groups 120,642 119,731
Bio Project 270 189
Bio Sample 3,142 2,192
Bio Systems 260 260
Assembly 5 5
Clone DB 102,310 102,310
Probe 3,491 3,350
PubChem BioAssay 144 4
Taxonomy 16 1

Comments and References:

Nota BeneGRIN (Apr 15, 2013)
Name accessed on 15 April 2013 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneFNA - Brassica
Warwick SI. 2009. Brassica Linnaeus, Sp. Pl. 2: 666. 1753; Gen. Pl. ed. 5, 299. 1754. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Nota BeneFlora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

Nota BeneLinnaean Plant Names
The Linnaean Plant Name Typification Project. 2004. The Natural History Museum, Cromwell Rd., London, SW7 5BD, UK.

Sorting Brassica rapa names
Porcher MH. 1999 and onward. Sorting Brassica rapa names. A Multilingual Multiscript Plant Name Database, The University of Melbourne, last modified 14 / 03 / 2006.

Nota BeneCommittee on Stabilization 1975
Committee on Stabilization 1975. Report of the standing committee on stabilization of specific names. Taxon 24 (1): 171-200.


Genome Information

Go to NCBI genomic BLAST® page for Brassica rapa
Genome view: 11 chromosomes
Names A1 A2 A3 A4 A5 A6 A7 A8 A9 A10 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
SHOTGUN ALL
JIC - John Innes Centre
520,710 520,710
Totals per type
520,710 520,710

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Brassica rapa taxonomy taxonomy/phylogenetic Arctos Specimen Database
Brassica rapa images images Bioimages.vanderbilt.edu
Brassica rapa taxonomy/phylogenetic CalPhotos
Brassica rapa L. taxonomy/phylogenetic Encyclopedia of life
96 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Brassica rapa L. taxonomy/phylogenetic Integrated Taxonomic Information System
Brassica rapa taxonomy/phylogenetic Lifemap
Brassica rapa taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Brassica rapa organism-specific WebScipio - eukaryotic gene identification
diArk: Brassica rapa organism-specific diArk - a resource for eukaryotic genome research
Brassica rapa taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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