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Taxonomy browser (Arabidopsis thaliana)

Arabidopsis thaliana

Taxonomy ID: 3702 (for references in articles please use NCBI:txid3702)
Scientific name: Arabidopsis thaliana
current: Arabidopsis thaliana
Genbank common name: thale cress
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: mouse-ear cress
common name: thale-cress
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
   Entrez records   
Database name Direct links
Nucleotide 413,210
Nucleotide EST 1,529,700
Nucleotide GSS 752,876
Protein 289,470
Structure 1,219
Genome 1
Popset 1,291
Conserved Domains 52
GEO Datasets 55,778
UniGene 30,633
PubMed Central 54,662
Gene 44,111
HomoloGene 10,445
SRA Experiments 46,457
GEO Profiles 2,014,308
Protein Clusters 19,225
Identical Protein Groups 94,103
Bio Project 4,584
Bio Sample 69,018
Bio Systems 1,028
Assembly 18
Clone DB 20,916
Probe 206,829
PubChem BioAssay 166
Taxonomy 1
Taxonomy 1

Comments and References:

Nota BeneFNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Nota BeneFlora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.


Genome Information

Go to NCBI genomic BLAST page for Arabidopsis thaliana
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CHIP PRIMERWALK SHOTGUN TRANSPOSON ALL
JCVI - J. Craig Venter Institute
- 8,002 150,365 118 158,485
PERLEGEN - Perlegen Sciences
13,546 - - - 13,546
TIGR - The Institute for Genome Research
- 630 11,362 - 11,992
Totals per type
13,546 8,632 161,727 118 184,023

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Arabidopsis thaliana taxonomy taxonomy/phylogenetic Arctos Specimen Database
Arabidopsis thalianacol organism-specific BioCyc
18 records from this provider supplemental materials Dryad Digital Repository
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Encyclopedia of life
35 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639560100: Arabidopsis thaliana Columbia organism-specific Integrated Microbial Genomes
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Integrated Taxonomic Information System
2 records from this provider clones/clone libraries Kazusa DNA Research Institute
Arabidopsis thaliana taxonomy/phylogenetic Lifemap
5 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Arabidopsis thaliana taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Arabidopsis thaliana taxonomy/phylogenetic The International Plant Names Index
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Arabidopsis thaliana organism-specific WebScipio - eukaryotic gene identification
27 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Arabidopsis thaliana taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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