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Taxonomy browser (Populus trichocarpa)

Populus trichocarpa

Taxonomy ID: 3694 (for references in articles please use NCBI:txid3694)
Scientific name: Populus trichocarpa Torr. & A.Gray
homotypic genbank synonym: Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw
Genbank common name: black cottonwood
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: western balsam poplar
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
   Entrez records   
Database name Direct links
Nucleotide 174,536
Nucleotide GSS 11,791
Protein 122,697
Structure 18
Genome 1
Popset 419
Conserved Domains 4
GEO Datasets 1,044
UniGene 15,056
PubMed Central 4,411
Gene 68,157
SRA Experiments 5,594
Protein Clusters 16,910
Identical Protein Groups 68,315
Bio Project 3,940
Bio Sample 7,143
Bio Systems 267
Assembly 4
Clone DB 53,942
Probe 400
Taxonomy 1

Comments and References:

Nota BeneFNA - Populus
Eckenwalder JE. 2009. Populus Linnaeus, Sp. Pl. 2: 1034. 1753; Gen. Pl. ed. 5, 456. 1754. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Nota BeneTROPICOS (Aug 29, 2013)
Name accessed on 29 August 2013 in: Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at:

Genome Information

Go to NCBI genomic BLAST page for Populus trichocarpa
Genome view: 20 chromosomes
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
80,884 80,884
Totals per type
80,884 80,884

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
Populus trichocarpa images images
dryaddb supplemental materials Dryad Digital Repository
Populus balsamifera subsp. trichocarpa (Torr. & Gray ex Hook.) Brayshaw taxonomy/phylogenetic Encyclopedia of life
2754 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2 records from this provider organism-specific Integrated Microbial Genomes
Populus trichocarpa taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Populus trichocarpa taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Populus trichocarpa organism-specific WebScipio - eukaryotic gene identification
diArk: Populus trichocarpa organism-specific diArk - a resource for eukaryotic genome research
Populus trichocarpa taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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