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Taxonomy browser (Populus trichocarpa)

Populus trichocarpa

Taxonomy ID: 3694 (for references in articles please use NCBI:txid3694)
Scientific name: Populus trichocarpa Torr. & A.Gray
Genbank common name: black cottonwood
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
genbank synonym: Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw
common name: western balsam poplar
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
   Entrez records   
Database name Direct links
Nucleotide 84,506
Nucleotide EST 89,943
Nucleotide GSS 11,791
Protein 132,205
Structure 18
Genome 1
Popset 419
Conserved Domains 4
GEO Datasets 978
UniGene 15,056
PubMed Central 4,349
Gene 68,157
SRA Experiments 5,570
Protein Clusters 16,910
Bio Project 3,788
Bio Sample 6,943
Bio Systems 267
Assembly 4
Clone DB 53,942
Probe 400
Taxonomy 1

Comments and References:

Nota BeneFNA - Populus
Eckenwalder JE. 2009. Populus Linnaeus, Sp. Pl. 2: 1034. 1753; Gen. Pl. ed. 5, 456. 1754. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Nota BeneTROPICOS (Aug 29, 2013)
Name accessed on 29 August 2013 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/


Genome Information

Go to NCBI genomic BLAST page for Populus trichocarpa
Genome view: 20 chromosomes
Names LGI LGII LGIII LGIV LGV LGVI LGVII LGVIII LGIX LGX LGXI LGXII LGXIII LGXIV LGXV LGXVI LGXVII LGXVIII LGXIX Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND ALL
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
80,884 80,884
Totals per type
80,884 80,884

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
Populus trichocarpa images images Bioimages.vanderbilt.edu
dryaddb supplemental materials Dryad Digital Repository
Populus balsamifera subsp. trichocarpa (Torr. & Gray ex Hook.) Brayshaw taxonomy/phylogenetic Encyclopedia of life
2754 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2614208521: Populus trichocarpa Nisqually-1 organism-specific Integrated Microbial Genomes
Populus trichocarpa taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Populus trichocarpa taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Populus trichocarpa organism-specific WebScipio - eukaryotic gene identification
diArk: Populus trichocarpa organism-specific diArk - a resource for eukaryotic genome research
Populus trichocarpa taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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