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Taxonomy browser (Phocaeicola dorei)

Phocaeicola dorei

Taxonomy ID: 357276 (for references in articles please use NCBI:txid357276)
current name
Phocaeicola dorei (Bakir et al. 2006) García-López et al. 2020 in [Validation List No. 193 (2020)]
homotypic synonym:
"Phocaeicola dorei" (Bakir et al. 2006) García-López et al. 2019, effective name in [García-López M et al. (2019)]
basionym:
Bacteroides dorei Bakir et al. 2006 in [Bakir MA et al. (2006b)]
type strain of Bacteroides dorei: DSM:17855, JCM:13471, personal::175
homotypic synonym:
Bacteroides dorei Bakir et al. 2006 emend. Hahnke et al. 2016, emended name in [Hahnke RL et al. (2016), List of Changes in Taxonomic Opinion No. 26 (2017)]
includes:
Bacteroides sp. 175T
Bacteroides sp. 219
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 45,640 44,105 216
Protein 370,564 338,929 -
Structure 2 1 -
PubMed Central 93 88 -
Gene 13,648 9,287 -
SRA Experiments 386 356 -
Protein Clusters 2,978 2,978 -
Identical Protein Groups 115,411 112,066 -
BioProject 95 86 -
BioSample 3,754 3,728 7
Datasets Genome 536 523 -
PubChem BioAssay 38 38 -
Taxonomy 7 1 -

Comments and References:
Validation List No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Bakir MA et al. (2006b), PubMed: abstract
Bakir, M.A., Sakamoto, M., Kitahara, M. Matsumoto, M., and Benno, Y. "Bacteroides dorei sp. nov., isolated from human faeces." Int. J. Syst. Evol. Microbiol. (2006) 56(7):1639-1643.
Hahnke RL et al. (2016), doi: 10.3389/fmicb.2016.02003, PubMed: abstract
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017), PubMed: abstract
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phocaeicola dorei meta-databases BacDive - Free access to bacterial information database
Bacteroides dorei Bakir et al. 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD: 62 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides dorei culture/stock collections Global Catalogue of Microorganisms
25 records from this provider organism-specific Integrated Microbial Genomes
Phocaeicola dorei | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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