Link to NCBI Front Page Taxonomy Logo

Try the new NCBI Taxonomy Browser for enhanced search and links to other NCBI data!
The redesigned NCBI Datasets Taxonomy Browser will replace this legacy browser in Fall 2026. Read more

Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 99 108 -
BioSample 6,699 6,725 -
Gene 9,293 13,654 -
Identical Protein Groups 114,250 117,538 -
Nucleotide 79,412 80,948 216
PubChem BioAssay 38 38 -
PMC 88 93 -
Protein 358,066 390,141 -
SRA 367 397 -
Structure 1 3 -
Taxonomy 7 7 -

Phocaeicola dorei

Taxonomy ID: 357276 (for references in articles please use ncbitaxon:357276)
current name
Phocaeicola dorei  (Bakir et al. 2006) García-López et al. 2020 in [Validation List No. 193 (2020)]
includes:
Bacteroides sp. 219
Bacteroides sp. 175T
basionym:
Bacteroides dorei  Bakir et al. 2006 in [Bakir MA et al. (2006b)]
type strain of Bacteroides dorei: DSM : 17855 , JCM : 13471 , personal : 175
homotypic synonym:
Bacteroides dorei  Bakir et al. 2006 emend. Hahnke et al. 2016 in  in  [Hahnke RL et al. (2016)] , [List of Changes in Taxonomic Opinion No. 26 (2017)]
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola

Comments and References:
Validation List No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019) , doi: 10.3389/fmicb.2019.02083 , Pubmed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Bakir MA et al. (2006b) , Pubmed: abstract
Bakir, M.A., Sakamoto, M., Kitahara, M. Matsumoto, M., and Benno, Y. "Bacteroides dorei sp. nov., isolated from human faeces." Int. J. Syst. Evol. Microbiol. (2006) 56(7):1639-1643.
Hahnke RL et al. (2016) , doi: 10.3389/fmicb.2016.02003 , Pubmed: abstract
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017) , Pubmed: abstract
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phocaeicola dorei type strain (BD-ID 1612) meta-databases BacDive
Bacteroides dorei Bakir et al. 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD: 62 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides dorei culture/stock collections Global Catalogue of Microorganisms
2914431536: Phocaeicola dorei BIOML-A8 organism-specific Integrated Microbial Genomes
2914121168: Phocaeicola dorei BIOML-A21 organism-specific Integrated Microbial Genomes
2914382137: Phocaeicola dorei BIOML-A10 organism-specific Integrated Microbial Genomes
2914156549: Phocaeicola dorei BIOML-A13 organism-specific Integrated Microbial Genomes
2914386689: Phocaeicola dorei BIOML-A24 organism-specific Integrated Microbial Genomes
2920039124: Phocaeicola dorei BIOML-A3 organism-specific Integrated Microbial Genomes
2914130098: Phocaeicola dorei BIOML-A12 organism-specific Integrated Microbial Genomes
2920048680: Phocaeicola dorei BIOML-A22 organism-specific Integrated Microbial Genomes
2913856445: Phocaeicola dorei BIOML-A5 organism-specific Integrated Microbial Genomes
2914134698: Phocaeicola dorei BIOML-A9 organism-specific Integrated Microbial Genomes
2913970877: Phocaeicola dorei AF27-18BH organism-specific Integrated Microbial Genomes
2914076620: Phocaeicola dorei BIOML-A7 organism-specific Integrated Microbial Genomes
2914161102: Phocaeicola dorei BIOML-A4 organism-specific Integrated Microbial Genomes
2914417552: Phocaeicola dorei BIOML-A19 organism-specific Integrated Microbial Genomes
2904860848: Phocaeicola dorei TM05-24 organism-specific Integrated Microbial Genomes
2920044113: Phocaeicola dorei BIOML-A20 organism-specific Integrated Microbial Genomes
2914443481: Phocaeicola dorei BIOML-A1 organism-specific Integrated Microbial Genomes
2919893329: Phocaeicola dorei BIOML-A23 organism-specific Integrated Microbial Genomes
2914111094: Phocaeicola dorei BIOML-A17 organism-specific Integrated Microbial Genomes
2914422100: Phocaeicola dorei BIOML-A26 organism-specific Integrated Microbial Genomes
2914125720: Phocaeicola dorei BIOML-A16 organism-specific Integrated Microbial Genomes
2901560734: Phocaeicola dorei AF14-1AC organism-specific Integrated Microbial Genomes
2816332489: Phocaeicola dorei An16 organism-specific Integrated Microbial Genomes
2893937180: Phocaeicola dorei OF04-10BH organism-specific Integrated Microbial Genomes
2816332490: Phocaeicola dorei An41 organism-specific Integrated Microbial Genomes
Phocaeicola dorei | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Phocaeicola dorei type strain (SI-ID 297141) meta-databases StrainInfo, Leibniz Institute DSMZ
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]