Taxonomy browser Taxonomy Browser (Xanthomonas oryzae)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	66	378	-
BioSample	198	1,477	-
Conserved Domains	-	1	-
GEO DataSets	4	212	-
Gene	1	34,526	-
Identical Protein Groups	135,370	243,688	-
Nucleotide	2,729	402,443	1,461
PubChem BioAssay	20	53	-
PMC	3,888	3,888	-
Protein	264,009	2,657,393	-
SRA	160	1,188	-
Structure	3	66	-
Taxonomy	14	14	-

Xanthomonas oryzae

Taxonomy ID: 347 (for references in articles please use ncbitaxon:347)

current name

Xanthomonas oryzae (ex Ishiyama 1922) Swings et al. 1990 emend. van den Mooter and Swings 1990

type strain of Xanthomonas oryzae: personal : Dye YK9 , personal : Rao X08 , ATCC : 35933 , CFBP : 2532 , ICMP : 3125 , BCCM/LMG : 5047 , NCCPPB : 3002

homotypic synonym:

"Pseudomonas oryzae" Uyeda and Ishiyama in Ishiyama 1926 , effective name¹⁾

"Xanthomonas oryzae" (Uyeda and Ishiyama 1926) Dowson 1943 , effective name²⁾

NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage(full): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Swings J et al. (1990)

Swings, J., van den Mooter, M., Vauterin, L., Hoste, B., Gillis, M., Mew, T.W., and Kersters, K. "Reclassification of the causal agents of bacterial blight (Xanthomonas campestris pv. oryzae) and bacterial leaf streak (Xanthomonas campestris pv. oryzicola) of rice as pathovars of Xanthomonas oryzae (ex Ishiyama 1922) sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1990) 40:309-311. [No PubMed record available.]

Van den Mooter M & Swings J (1990)

Van den Mooter, M., and Swings, J. "Numerical analysis of 295 phenotypic features of 266 Xanthomonas strains and related strains and an improved taxonomy of the genus." Int. J. Syst. Bacteriol. (1990) 40:348-369.

Young JM et al. (1996)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [N.B.: reference with type strain information]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.