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Taxonomy browser (Cryptomeria japonica)

Cryptomeria japonica

Taxonomy ID: 3369 (for references in articles please use NCBI:txid3369)
Scientific name: Cryptomeria japonica
current: Cryptomeria japonica
Genbank common name: Japanese cedar
Inherited blast name: seed plants
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Cupressales; Cupressaceae; Cryptomeria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 169,472 169,448
Nucleotide EST 151,725 151,725
Protein 1,484 1,469
Structure 1 1
Genome 1 1
Popset 63 63
GEO Datasets 1,186 1,186
PubMed Central 467 457
Gene 118 118
SRA Experiments 52 52
Protein Clusters 61 61
Identical Protein Groups 359 353
Bio Project 18 18
Bio Sample 71 71
Probe 598 598
Taxonomy 2 1

Comments and References:

Nota BeneGymnosperm Database
Name verified on date of entry into taxonomy database in: Earle, CJ. 2004 onward. The Gymnosperm Database. (on-line)

Nota BeneFlora of China - Taxodiaceae
Liguo Fu, Yong-fu Yu & Robert R. Mill. Taxodiaceae Warming. In Wu, Z. Y. & P. H. Raven, eds. July 1999. Flora of China. Vol. 4 (Cycadaceae through Fagaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online version

Nota BeneTROPICOS (Sept 25, 2014)
Name accessed on 25 September 2014 in: Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at:

Genome Information

Go to NCBI genomic BLAST page for Cryptomeria japonica
Genome view: 12 chromosomes
Names LG1 LG2 LG3 LG4 LG5 LG6 LG7 LG8 LG9 LG10 LG11 Pltd

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
Cryptomeria japonica (Thunb. ex L.f.) D. Don taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Cryptomeria japonica (L. f.) D. Don taxonomy/phylogenetic Integrated Taxonomic Information System
Cryptomeria japonica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Cryptomeria japonica taxonomy/phylogenetic The International Plant Names Index
Cryptomeria japonica taxonomy/phylogenetic TreeBase
Cryptomeria japonica (L. f.) D. Don taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
diArk: Cryptomeria japonica organism-specific diArk - a resource for eukaryotic genome research
Cryptomeria japonica taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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