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Taxonomy browser (Clavibacter sepedonicus)

Clavibacter sepedonicus

Taxonomy ID: 31964 (for references in articles please use NCBI:txid31964)
current name
Clavibacter sepedonicus (Spieckermann and Kotthoff 1914) Li et al. 2018 in [Li X et al. (2018)]
homotypic synonym:
"Aplanobacter sepedonicum" (sic) (Spieckermann and Kotthoff 1914) Smith 1920, effective name 1)
"Phytomonas sepedonica" (Spieckermann and Kotthoff 1914) Magrou 1937, effective name 1)
"Mycobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name 1)
"Pseudobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name 1)
Clavibacter sepedonicus (Davis et al. 1984) Nouioui et al. 2018, nom. illeg. 2) in [Nouioui I et al. (2018c), Validation List No. 184 (2018)]
Corynebacterium sepedonicum (Spieckermann and Kotthoff 1914) Skaptason and Burkholder 1942 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
Corynebacterium michiganense subsp. sepedonicum (Spieckermann and Kotthoff 1914) Carlson and Vidaver 1982
Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al. 1984
type strain of Corynebacterium sepedonicum: ATCC:33113, CCUG:23908, CFBP:2049, CIP:104844, DSM:20744, ICMP:2535, JCM:9667, BCCM/LMG:2889, NCPPB:2137, VKM:Ac:1405
basionym:
"Bacterium sepedonicum" Spieckermann and Kotthoff 1914, effective name 1)
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter
   Entrez records   
Database name Direct links Links from type
Nucleotide 425 36
Protein 13,938 -
Genome 1 -
Popset 12 -
PubMed Central 26 -
Gene 6,726 -
SRA Experiments 2 -
Protein Clusters 1,888 -
Identical Protein Groups 4,659 -
BioProject 5 -
BioSample 4 -
Assembly 4 1
PubChem BioAssay 1 -
Taxonomy 1 -

Notes:

Comments and References:

Li X et al. (2018), doi: 10.1099/ijsem.0.002492, PubMed: abstract
Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68(1):234-240.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Validation List No. 184 (2018), PubMed: abstract
Validation List No. 184: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(11):3379-3393.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Davis MY et al. (1984)
Davis, M.J., Gillaspsie Jr., A.G., Vidaver, A.K., and Harris, R.W. "Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease." Int. J. Syst. Bacteriol. (1984) 34:107-117. [No PubMed record available.]
Carlson RR & Vidaver AK (1982)
Carlson, R.R., and Vidaver, A.K. "Taxonomy of Corynebacterium plant pathogens, including a new pathogen of wheat, based on polyacrylamide gel electrophoresis of cellular proteins." Int. J. Syst. Bacteriol. (1982) 32(3):315-326. [No PubMed record available.]
Oren A & Garrity GM (2018), doi:10.1099/ijs
Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981. [N.B.: List Editors state that the names Clavibacter capsici, Clavibacter insidiosus, Clavibacter nebrasksensis, Clavibacter sepedonicus and Clavibacter tesselarius proposed by Li et al. are illegitimate as they contravene Rule 34a and 50a of the International Code of Nomenclature of Prokaryotes. The use of illegitimate names contravenes Rule 51a. Counterargument is presented by Tindall (2019).]
Tindall BJ (2019), doi:10.1099/ijsem.0.003529
Tindall, B.J. "The role of incorrect citation of the International Code of Nomenclature of Prokaryotes and subsequent misinterpretation in causing unnecessary nomenclatural confusion." Int. J. Syst. Evol. Microbiol. (2019) 69(8):2621-2625.
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Zgurskaya HI et al. (1993) (reference relating to orthographic revision)
Zgurskaya, H.I., Evtushenko, L.I., Akimov, V.N., and Kalakoutskii. L.V. "Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses." Int. J. Syst. Bacteriol. (1993) 43:143-149. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clavibacter sepedonicus meta-databases BacDive
Clavibacter michiganensis ATCC 33113 organism-specific BioCyc
Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al., 1984 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0001336 organism-specific Genomes On Line Database
Clavibacter michiganensis subsp. sepedonicus culture/stock collections Global Catalogue of Microorganisms
642555124: Clavibacter michiganensis sepedonicus ATCC 33113 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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