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Taxonomy browser (Clavibacter michiganensis subsp. sepedonicus)

Clavibacter michiganensis subsp. sepedonicus

Taxonomy ID: 31964 (for references in articles please use NCBI:txid31964)
Scientific name: Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al. 1984
type strain of Clavibacter michiganensis subsp. sepedonicus: ATCC:33113
type strain of Clavibacter michiganensis subsp. sepedonicus: CCUG:23908
type strain of Clavibacter michiganensis subsp. sepedonicus: CFBP:2049
type strain of Clavibacter michiganensis subsp. sepedonicus: CIP:104844
type strain of Clavibacter michiganensis subsp. sepedonicus: DSM:20744
type strain of Clavibacter michiganensis subsp. sepedonicus: ICMP:2535
type strain of Clavibacter michiganensis subsp. sepedonicus: JCM:9667
type strain of Clavibacter michiganensis subsp. sepedonicus: BCCM/LMG:2889
type strain of Clavibacter michiganensis subsp. sepedonicus: NCPPB:2137
type strain of Clavibacter michiganensis subsp. sepedonicus: VKM:Ac:1405
Inherited blast name: high GC Gram+
Rank: subspecies
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Bacterium sepedonicum" Spieckermann and Kotthoff 1914, effective name 1)
synonym: "Aplanobacter sepedonicum" (sic) (Spieckermann and Kotthoff 1914) Smith 1920, effective name 1)
synonym: "Phytomonas sepedonica" (Spieckermann and Kotthoff 1914) Magrou 1937, effective name 1)
synonym: "Mycobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name 1)
synonym: "Pseudobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name 1)
synonym: Corynebacterium sepedonicum (Spieckermann and Kotthoff 1914) Skaptason and Burkholder 1942 (Approved Lists 1980), nom. approb. 2)
synonym: Corynebacterium michiganense subsp. sepedonicum (Spieckermann and Kotthoff 1914) Carlson and Vidaver 1982
synonym: Clavibacter michiganense subsp. sepedonicum
synonym: Clavibacter sepedonicus nom. illegit.
equivalent name: Clavibacter michiganense sepedonicum
equivalent name: Clavibacter michiganensis sepedonicum
Lineage( abbreviated )
Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter
   Entrez records   
Database name Direct links
Nucleotide 379
Protein 12,926
Genome 1
Popset 12
PubMed Central 19
Gene 6,621
Protein Clusters 1,888
Identical Protein Groups 4,217
Bio Project 4
Bio Sample 3
Bio Systems 185
Assembly 3
Taxonomy 1

Notes:

Comments and References:

Nota BeneDavis MY et al. (1984)
Davis, M.J., Gillaspsie Jr., A.G., Vidaver, A.K., and Harris, R.W. "Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease." Int. J. Syst. Bacteriol. (1984) 34:107-117. [No PubMed record available.]

Nota BeneCarlson RR & Vidaver AK (1982)
Carlson, R.R., and Vidaver, A.K. "Taxonomy of Corynebacterium plant pathogens, including a new pathogen of wheat, based on polyacrylamide gel electrophoresis of cellular proteins." Int. J. Syst. Bacteriol. (1982) 32:315-326. [No PubMed record available.]

Reference to PubMed documentLi X et al. (2018)
Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68:234-240. [N.B.: the taxonimic names proposed by Li et al. are illegitimate. See Oren and Garrity (2018).]

Nota BeneOren A & Garrity GM (2018)
Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981.

Skerman VBD et al. (1980) (Corynebacterium sepedonicum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [See 'Approved Lists of Bacterial Names' LinkOut below.]

Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

Nota BeneZgurskaya HI et al. (1993) (reference relating to orthographic revision)
Zgurskaya, H.I., Evtushenko, L.I., Akimov, V.N., and Kalakoutskii. L.V. "Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses." Int. J. Syst. Bacteriol. (1993) 43:143-149. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider meta-databases BacDive
Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al., 1984 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0001336 organism-specific Genomes On Line Database
Clavibacter michiganensis subsp. sepedonicus culture/stock collections Global Catalogue of Microorganisms
642555124: Clavibacter michiganensis sepedonicus ATCC 33113 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Clavibacter michiganensis subsp. sepedonicus (taxon passport) culture/stock collections StrainInfo
2 records from provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Notes:
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