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Taxonomy browser (Clavibacter michiganensis subsp. sepedonicus)

Clavibacter michiganensis subsp. sepedonicus

Taxonomy ID: 31964 (for references in articles please use NCBI:txid31964)

Scientific name: Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al. 1984: type strain of Clavibacter michiganensis subsp. sepedonicus: ATCC:33113
type strain of Clavibacter michiganensis subsp. sepedonicus: CCUG:23908
type strain of Clavibacter michiganensis subsp. sepedonicus: CFBP:2049
type strain of Clavibacter michiganensis subsp. sepedonicus: CIP:104844
type strain of Clavibacter michiganensis subsp. sepedonicus: DSM:20744
type strain of Clavibacter michiganensis subsp. sepedonicus: ICMP:2535
type strain of Clavibacter michiganensis subsp. sepedonicus: JCM:9667
type strain of Clavibacter michiganensis subsp. sepedonicus: BCCM/LMG:2889
type strain of Clavibacter michiganensis subsp. sepedonicus: NCPPB:2137
type strain of Clavibacter michiganensis subsp. sepedonicus: VKM:Ac:1405

Inherited blast name: high GC Gram+
Rank: subspecies
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

synonym:	"Bacterium sepedonicum" Spieckermann and Kotthoff 1914, effective name¹⁾
synonym:	"Aplanobacter sepedonicum" (sic) (Spieckermann and Kotthoff 1914) Smith 1920, effective name¹⁾
synonym:	"Phytomonas sepedonica" (Spieckermann and Kotthoff 1914) Magrou 1937, effective name¹⁾
synonym:	"Mycobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name¹⁾
synonym:	"Pseudobacterium sepedonicum" (Spieckermann and Kotthoff 1914) Krasil'nikov 1949, effective name¹⁾
synonym:	Corynebacterium sepedonicum (Spieckermann and Kotthoff 1914) Skaptason and Burkholder 1942 (Approved Lists 1980), nom. approb.²⁾
synonym:	**Corynebacterium michiganense subsp. sepedonicum** (Spieckermann and Kotthoff 1914) Carlson and Vidaver 1982
synonym:	**Clavibacter michiganense subsp. sepedonicum**
synonym:	Clavibacter sepedonicus nom. illegit.
equivalent name:	**Clavibacter michiganense sepedonicum**
equivalent name:	**Clavibacter michiganensis sepedonicum**

Lineage( abbreviated ): Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter

Entrez records
Database name	Direct links
Nucleotide	379
Protein	12,926
Genome	1
Popset	12
PubMed Central	19
Gene	6,621
Protein Clusters	1,888
Identical Protein Groups	4,217
Bio Project	4
Bio Sample	3
Bio Systems	185
Assembly	3
Taxonomy	1

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).
2) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Davis MY et al. (1984): Davis, M.J., Gillaspsie Jr., A.G., Vidaver, A.K., and Harris, R.W. "Clavibacter: a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli subsp. xyli sp. nov., subsp. nov. and Clavibacter xyli subsp. cynodontis subsp. nov., pathogens that cause ratoon stunting disease of sugarcane and Bermudagrass stunting disease." Int. J. Syst. Bacteriol. (1984) 34:107-117. [No PubMed record available.]

Carlson RR & Vidaver AK (1982): Carlson, R.R., and Vidaver, A.K. "Taxonomy of Corynebacterium plant pathogens, including a new pathogen of wheat, based on polyacrylamide gel electrophoresis of cellular proteins." Int. J. Syst. Bacteriol. (1982) 32:315-326. [No PubMed record available.]

Li X et al. (2018): Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68:234-240. [N.B.: the taxonimic names proposed by Li et al. are illegitimate. See Oren and Garrity (2018).]

Oren A & Garrity GM (2018): Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981.

Skerman VBD et al. (1980) (Corynebacterium sepedonicum): Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [See 'Approved Lists of Bacterial Names' LinkOut below.]

Young JM et al. (1996) (reference with type strain information): Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

Zgurskaya HI et al. (1993) (reference relating to orthographic revision): Zgurskaya, H.I., Evtushenko, L.I., Akimov, V.N., and Kalakoutskii. L.V. "Rathayibacter gen. nov., including the species Rathayibacter rathayi comb. nov., Rathayibacter tritici comb. nov., Rathayibacter iranicus comb. nov., and six strains from annual grasses." Int. J. Syst. Bacteriol. (1993) 43:143-149. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
2 records from this provider	meta-databases	BacDive
Clavibacter michiganensis subsp. sepedonicus corrig. (Spieckermann and Kotthoff 1914) Davis et al., 1984	taxonomy/phylogenetic	Encyclopedia of life
GOLD: Go0001336	organism-specific	Genomes On Line Database
Clavibacter michiganensis subsp. sepedonicus	culture/stock collections	Global Catalogue of Microorganisms
642555124: Clavibacter michiganensis sepedonicus ATCC 33113	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Clavibacter michiganensis subsp. sepedonicus (taxon passport)	culture/stock collections	StrainInfo
2 records from provider	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

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A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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