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Taxonomy browser (Stutzerimonas stutzeri)

Stutzerimonas stutzeri

Taxonomy ID: 316 (for references in articles please use NCBI:txid316)
current name
Stutzerimonas stutzeri (Lehmann and Neuman 1896) Lalucat et al. 2022 in [Lalucat J et al. (2022), Validation List No. 204 (2022)]
homotypic synonym:
"Bacillus stutzeri" Chester 1901, effective name 1)
"Achromobacter stutzeri" Bergey et al. 1930, effective name 1)
"Pseudomonas stanieri" Mandel 1966, effective name 1)
Pseudomonas stutzeri (Lehmann and Neumann 1896) Sijderius 1946 (Approved Lists 1980) 2) in [Skerman VBD et al. (1980)]
type strain of Pseudomonas stutzeri: ATCC:17588, CCUG:11256, CFBP:2443, CIP:103022, DSM:5190, IFO:14165, JCM:5965, BCCM/LMG:11199, NBRC:14165, NCCB:76042, VKM:B-975, CGMCC:1.1803, NCIMB:11358, NCPPB:1973, NCTC:12262
basionym:
"Bacterium stutzeri" Lehmann and Neumann 1896, effective name 1)
includes:
Pseudomonas sp. CECRI-25/07
Pseudomonas sp. DSM 24582
Pseudomonas sp. G2C
Pseudomonas sp. JKR47
Pseudomonas sp. MN7SW4
Pseudomonas sp. OS38A
Pseudomonas sp. PX-A-Ps.sp
Pseudomonas sp. PX-L-P.sp1
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus denitrificans II" Burri and Stutzer 1895
heterotypic synonym
"Bacillus nitrogenes" Migula 1900, effective name 1)
heterotypic synonym
"Achromobacter sewerinii" Bergey et al. 1923, effective name 1)
heterotypic synonym
Pseudomonas perfectomarina (ex ZoBell and Upham 1944) Baumann et al. 1983
type strain of Pseudomonas perfectomarina: ATCC:14405, personal::ZoBell 632, BCCM/LMG:2243, NCIMB:568, IAM:12931
homotypic synonym:
"Pseudomonas perfectomarinus" ZoBell and Upham 1944, effective name, orth. var. 1),3)
homotypic synonym:
Stutzerimonas perfectomarina (Baumann et al. 1983) Gomila et al. 2022 in [Gomila M et al. (2022), Validation List No. 208 (2022)]
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Stutzerimonas; Stutzerimonas stutzeri group; Stutzerimonas stutzeri subgroup
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 25,572 23,660 67
Protein 641,246 588,861 -
Structure 109 88 -
Genome 1 1 -
Popset 467 467 -
GEO Datasets 44 29 -
PubMed Central 54 31 -
Gene 59,976 25,710 -
SRA Experiments 989 742 -
Protein Clusters 6,458 6,458 -
Identical Protein Groups 357,895 341,232 -
BioProject 256 174 -
BioSample 1,108 879 32
Assembly 713 695 2
PubChem BioAssay 8 8 -
Taxonomy 20 1 -

Notes:

Comments and References:

Lalucat J et al. (2022), PubMed: abstract
Lalucat, J., Gomila, M., Mulet, M., Zaruma, A., and García-Valdés, E. "Past, present and future of the boundaries of the Pseudomonas genus: proposal of Stutzerimonas gen. nov." Syst. Appl. Microbiol. (2022) 45(1):126289.
Validation List No. 204 (2022), PubMed: abstract
Validation List No. 204: "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2022) 72(3):005260.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Gomila M et al. (2022), doi: 10.3390/microorganisms10071363, PubMed: abstract
Gomila, M., Mulet, M., García-Valdés, E., and Lalucat, J. "Genome-based taxonomy of the genus Stutzerimonas and proposal of S. frequens sp. nov. and S. degradans sp. nov. and emended descriptions of S. perfectomarina and S. chloritidismutans." Microorganisms (2022) 10(7):1363.
Validation List No. 208 (2022)
Validation List No. 208: "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2022) 72(11):005592.
Baumann P et al. (1983)
Baumann, P., Bowditch, R.D., Baumann, L., and Beaman, B. "Taxonomy of marine Pseudomonas species: P. stanieri sp. nov.; P. perfectomarina sp. nov., nom. rev.; P. nautica; and P. doudoroffii." Int. J. Syst. Bacteriol. (1983) 33:857-865. [No PubMed record available.]
Cladera AM et al. (2006)
Cladera, A.M., Garcia-Valdes, E., and Lalucat, J. "Genotype versus phenotype in the circumscription of bacterial species: the case of Pseudomonas stutzeri and Pseudomonas chloritidismutans." Archiv. Microibol. (2006) 184(6):353-361. Published online 29 November 2005.
Dohler K et al. (1987)
Dohler, K., Huss, V.A.R., and Zumft, W.G. "Transfer of Pseudomonas perfectomarina Baumann, Bowditch, Baumann, and Beaman 1983 to Pseudomonas stutzeri (Lehmann and Neumann 1896) Sidjerius 1946." Int. J. Syst. Bacteriol. (1987) 37:1-3. [No PubMed record available.]
Ginard M et al. (1997)
Ginard, M., Lalucat, J., Tummler, B., and Romling, U. "Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations." Int. J. Syst. Bacteriol. (1997) 47:132-143.
Guasp C et al. (2000)
Guasp, C., Moore, E.R., Lalucat, J., and Bennasar, A. "Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species." Int. J. Syst. Evol. Microbiol. (2000) 50(4):1629-1639.
List of Changes in Taxonomic Opinion No. 4 (2006), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64506-0
Euzeby, J.P. "List of changes in taxonomic opinion no. 4. Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2006) 56(7):1463.
Rainey PB et al. (1994)
Rainey, P.B., Thompson, I.P., and Palleroni, N.J. "Genome and fatty acid analysis of Pseudomonas stutzeri." Int. J. Syst. Bacteriol. (1994) 44:54-61.
Rossello-Mora RA et al. (1993)
Rossello-Mora, R.A., Garcia-Valdes, E., and Lalucat, J. "Taxonomic relationship between Pseudomonas perfectomarina ZoBell and Pseudomonas stutzeri." Int. J. Syst. Bacteriol. (1993) 43:852-854. [No PubMed record available.]
Sijderius R (1946)
Sijderius, R. "Heterotrophe bacterien, die thiosulfaat oxydeeren." Thesis: University Amsterdam. Kluwer, Deventer, 1946.
ZoBell CE & Upham HC (1944)
Zobell, C.E., and Upham, H.C. "A list of marine bacteria including descriptions of sixty new species." Bull. Scripps Inst. Oceanogr. (1944) 5:239-292. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas stutzeri meta-databases BacDive
6 records from this provider organism-specific BioCyc
Pseudomonas perfectomarina corrig. (ex ZoBell and Upham 1944) Baumann et al., 1983 taxonomy/phylogenetic Encyclopedia of life
17 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas stutzeri culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
47 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas stutzeri taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Pseudomonas perfectomarina Baumann, Bowditch, Baumann & Beaman, 1983 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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