Taxonomy browser (Stutzerimonas stutzeri)

type strain of Pseudomonas stutzeri: ATCC :17588, CCUG :11256, CFBP:2443, CIP:103022, DSM :5190, IFO :14165, JCM :5965, BCCM/LMG :11199, NBRC :14165, NCCB:76042, VKM :B-975, CGMCC :1.1803, NCIMB:11358, NCPPB:1973, NCTC :12262

basionym:

"Bacterium stutzeri" Lehmann and Neumann 1896, effective name

includes:

Pseudomonas sp. CECRI-25/07

Pseudomonas sp. DSM 24582

Pseudomonas sp. G2C

Pseudomonas sp. JKR47

Pseudomonas sp. MN7SW4

Pseudomonas sp. OS38A

Pseudomonas sp. PX-A-Ps.sp

Pseudomonas sp. PX-L-P.sp1

NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Bacillus denitrificans II" Burri and Stutzer 1895

heterotypic synonym

"Bacillus nitrogenes" Migula 1900, effective name⁵⁾

heterotypic synonym

"Achromobacter sewerinii" Bergey et al. 1923, effective name⁶⁾

heterotypic synonym

Pseudomonas perfectomarina (ex ZoBell and Upham 1944) Baumann et al. 1983

type strain of Pseudomonas perfectomarina: ATCC :14405, personal::ZoBell 632, BCCM/LMG :2243, NCIMB:568, IAM:12931

homotypic synonym:

"Pseudomonas perfectomarinus" ZoBell and Upham 1944, effective name, orth. var.

homotypic synonym:

Stutzerimonas perfectomarina (Baumann et al. 1983) Gomila et al. 2022 in [Gomila M et al. (2022), Validation List No. 208 (2022)]

Lineage( full ): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Stutzerimonas; Stutzerimonas stutzeri group; Stutzerimonas stutzeri subgroup

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	27,404	25,492	67
Protein	669,815	616,845	-
Structure	109	88	-
GEO Datasets	44	29	-
PubMed Central	68	44	-
Gene	59,983	25,717	-
SRA Experiments	1,049	797	-
Protein Clusters	6,458	6,458	-
Identical Protein Groups	380,869	364,431	-
BioProject	278	196	-
BioSample	1,204	970	32
Datasets Genome	737	719	-
PubChem BioAssay	9	9	-
Taxonomy	20	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) not "Pseudomonas stutzeri" Migula 1900
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Lalucat J et al. (2022), PubMed: abstract

Lalucat, J., Gomila, M., Mulet, M., Zaruma, A., and García-Valdés, E. "Past, present and future of the boundaries of the Pseudomonas genus: proposal of Stutzerimonas gen. nov." Syst. Appl. Microbiol. (2022) 45(1):126289.

Validation List No. 204 (2022), PubMed: abstract

Validation List No. 204: "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2022) 72(3):005260.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Gomila M et al. (2022), doi: 10.3390/microorganisms10071363, PubMed: abstract

Gomila, M., Mulet, M., García-Valdés, E., and Lalucat, J. "Genome-based taxonomy of the genus Stutzerimonas and proposal of S. frequens sp. nov. and S. degradans sp. nov. and emended descriptions of S. perfectomarina and S. chloritidismutans." Microorganisms (2022) 10(7):1363.

Validation List No. 208 (2022)

Validation List No. 208: "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2022) 72(11):005592.

Baumann P et al. (1983)

Baumann, P., Bowditch, R.D., Baumann, L., and Beaman, B. "Taxonomy of marine Pseudomonas species: P. stanieri sp. nov.; P. perfectomarina sp. nov., nom. rev.; P. nautica; and P. doudoroffii." Int. J. Syst. Bacteriol. (1983) 33:857-865. [No PubMed record available.]

Cladera AM et al. (2006)

Cladera, A.M., Garcia-Valdes, E., and Lalucat, J. "Genotype versus phenotype in the circumscription of bacterial species: the case of Pseudomonas stutzeri and Pseudomonas chloritidismutans." Archiv. Microibol. (2006) 184(6):353-361. Published online 29 November 2005.

Dohler K et al. (1987)

Dohler, K., Huss, V.A.R., and Zumft, W.G. "Transfer of Pseudomonas perfectomarina Baumann, Bowditch, Baumann, and Beaman 1983 to Pseudomonas stutzeri (Lehmann and Neumann 1896) Sidjerius 1946." Int. J. Syst. Bacteriol. (1987) 37:1-3. [No PubMed record available.]

Ginard M et al. (1997)

Ginard, M., Lalucat, J., Tummler, B., and Romling, U. "Genome organization of Pseudomonas stutzeri and resulting taxonomic and evolutionary considerations." Int. J. Syst. Bacteriol. (1997) 47:132-143.

Guasp C et al. (2000)

Guasp, C., Moore, E.R., Lalucat, J., and Bennasar, A. "Utility of internally transcribed 16S-23S rDNA spacer regions for the definition of Pseudomonas stutzeri genomovars and other Pseudomonas species." Int. J. Syst. Evol. Microbiol. (2000) 50(4):1629-1639.

List of Changes in Taxonomic Opinion No. 4 (2006), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64506-0

Euzeby, J.P. "List of changes in taxonomic opinion no. 4. Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2006) 56(7):1463.

Rainey PB et al. (1994)

Rainey, P.B., Thompson, I.P., and Palleroni, N.J. "Genome and fatty acid analysis of Pseudomonas stutzeri." Int. J. Syst. Bacteriol. (1994) 44:54-61.

Rossello-Mora RA et al. (1993)

Rossello-Mora, R.A., Garcia-Valdes, E., and Lalucat, J. "Taxonomic relationship between Pseudomonas perfectomarina ZoBell and Pseudomonas stutzeri." Int. J. Syst. Bacteriol. (1993) 43:852-854. [No PubMed record available.]

Sijderius R (1946)

Sijderius, R. "Heterotrophe bacterien, die thiosulfaat oxydeeren." Thesis: University Amsterdam. Kluwer, Deventer, 1946.

ZoBell CE & Upham HC (1944)

Zobell, C.E., and Upham, H.C. "A list of marine bacteria including descriptions of sixty new species." Bull. Scripps Inst. Oceanogr. (1944) 5:239-292. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pseudomonas stutzeri	meta-databases	BacDive - Free access to bacterial information database
18 records from this provider	organism-specific	BioCyc
Pseudomonas perfectomarina corrig. (ex ZoBell and Upham 1944) Baumann et al., 1983	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 96 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Pseudomonas stutzeri	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
49 records from this provider	organism-specific	Integrated Microbial Genomes
Pseudomonas stutzeri	taxonomy/phylogenetic	Lifemap
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Stutzerimonas stutzeri \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Pseudomonas perfectomarina Baumann, Bowditch, Baumann & Beaman, 1983	taxonomy/phylogenetic	World Register of Marine Species
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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