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Taxonomy browser (Takifugu rubripes)

Takifugu rubripes

Taxonomy ID: 31033 (for references in articles please use NCBI:txid31033)
Scientific name: Takifugu rubripes
current: Takifugu rubripes
Genbank common name: torafugu
Inherited blast name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
genbank synonym: Fugu rubripes
synonym: Sphaeroides rubripes
synonym: Tetraodon rubripes
common name: tiger puffer
Lineage( abbreviated )
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
   Entrez records   
Database name Subtree links Direct links
Nucleotide 52,009 51,998
Nucleotide EST 26,069 26,069
Nucleotide GSS 50,808 50,808
Protein 33,771 33,760
Structure 1 1
Genome 1 1
Popset 43 43
GEO Datasets 20 20
UniGene 3,800 3,800
PubMed Central 2,603 2,603
Gene 23,853 23,853
SRA Experiments 57 57
Protein Clusters 13 13
Identical Protein Groups 28,769 28,759
Bio Project 36 36
Bio Sample 1,059 1,059
Bio Systems 342 342
Assembly 2 2
Probe 239 239

Comments and References:

Takifugu
The name Takifugu has priority over the name Fugu. For an explanation of this synonymy see: Matsuura, K. 1990. The pufferfish genus Fugu Abe, 1952, a junior subjective synonym of Takifugu Abe, 1949. Bull. Natn. Sci. Mus., Tokyo, Ser. A. 18(1):15-20.


Genome Information

Go to NCBI genomic BLAST page for Takifugu rubripes
Genome view: 22 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
SHOTGUN WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
- 3,527,053 3,527,053
NISC - NIH Intramural Sequencing Center
112,747 - 112,747
Totals per type
112,747 3,527,053 3,639,800

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Takifugu rubripes taxonomy/phylogenetic Barcodes of Life
2 records from this provider supplemental materials Dryad Digital Repository
Takifugu rubripes (Temminck & Schlegel, 1850) taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Takifugu rubripes (Temminck and Schlegel, 1850) taxonomy/phylogenetic Integrated Taxonomic Information System
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Takifugu rubripes taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
WebScipio: Takifugu rubripes organism-specific WebScipio - eukaryotic gene identification
Takifugu rubripes (Temminck & Schlegel, 1850) taxonomy/phylogenetic World Register of Marine Species
diArk: Takifugu rubripes organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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