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Taxonomy browser (Vicugna pacos)

Vicugna pacos

Taxonomy ID: 30538 (for references in articles please use NCBI:txid30538)
Scientific name: Vicugna pacos
homotypic synonym: Lama guanicoe pacos
homotypic synonym: Lama pacos
Genbank common name: alpaca
Inherited blast name: even-toed ungulates
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Lineage( abbreviated )
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda; Camelidae; Vicugna
   Entrez records   
Database name Subtree links Direct links
Nucleotide 324,716 320,390
Protein 34,023 34,008
Structure 64 64
Genome 1 1
Popset 15 15
PubMed Central 330 330
Gene 24,210 24,210
SRA Experiments 42 28
Protein Clusters 12 12
Identical Protein Groups 29,764 29,754
Bio Project 8 7
Bio Sample 13 12
Assembly 4 3
Probe 460 460
Taxonomy 3 1

Comments and References:

Reference to PubMed documentThe alpaca is descended from the vicuna ref. 1

The alpaca is descended from the vicuna ref. 2
Marin JC, Zapata B, Gonzalez BA, et al. Systematics, taxonomy and domestication of alpaca and llama: new chromosomal and molecular evidence. Revista Chilena de historia natural 80 (2): 121-140 Jun 2007.


Genome Information

Go to NCBI genomic BLAST page for Vicugna pacos
Genome view: 38 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 X Y
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND SHOTGUN WGS ALL
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
8,217 - - 8,217
NISC - NIH Intramural Sequencing Center
- 616,297 - 616,297
WUGSC - Washington University, Genome Sequencing Center
1,302,171 - 9,943,973 11,246,144
Totals per type
1,310,388 616,297 9,943,973 11,870,658

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lama pacos taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider supplemental materials Dryad Digital Repository
Lama pacos (Linnaeus, 1758) taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0003309 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lama pacos (Linnaeus, 1758) taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
WebScipio: Lama pacos organism-specific WebScipio - eukaryotic gene identification
diArk: Lama pacos organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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