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Taxonomy browser (Pseudomonas putida)

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use NCBI:txid303)
current name
Pseudomonas putida (Trevisan 1889) Migula 1895
type strain of Pseudomonas putida: ATCC:12633, CCUG:12690, CFBP:2066, CIP:52.191, DSM:291, HAMBI:7, IFO:14164, JCM:13063, JCM:20120, BCCM/LMG:2257, NBRC:14164, NCAIM B.01634, NCCB:68020, NCCB:72006, NCTC:10936, IAM:1236, ICPB:2963, NCIMB:9494
homotypic synonym:
"Bacillus fluorescens putidus" Flugge 1886, effective name 1)
"Bacillus putidus" Trevisan 1889, effective name 1)
includes:
Pseudomonas sp. FAR1/2016
Pseudomonas sp. ACP_03
Pseudomonas sp. B21-029
Pseudomonas sp. PSE3
Pseudomonas sp. PX-A-Ps.sp2
bacterium ASFP-1
bacterium MASFP-4
Pseudomonas sp. ECT1/2016
Pseudomonas sp. ECT2/2016
Pseudomonas sp. ETC3/2016
Pseudomonas sp. KDB25
Pseudomonas sp. PT1/2016
Pseudomonas sp. TAU2/2016
Pseudomonas sp. UF1/2016
Pseudomonas arvilla C-1
Pseudomonas putida HK5
Pseudomonas sp. BW11M1
Pseudomonas sp. CT363
Pseudomonas sp. DRA525
Pseudomonas sp. GM4FR
Pseudomonas sp. KDS 6
Pseudomonas sp. TC29-1
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Pseudomonas eisenbergii" Migula 1900, effective name 1)
heterotypic synonym
"Pseudomonas convexa" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas incognita" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas ovalis" Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas rugosa" (Wright 1895) Chester 1901, effective name 1)
heterotypic synonym
"Pseudomonas striata" Chester 1901, effective name 1)
heterotypic synonym
Pseudomonas arvilla
heterotypic synonym
Arthrobacter siderocapsulatus Dubinin (sic) and Zhdanov 1975
homotypic synonym:
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980), nom. approb. 2)
type strain of Arthrobacter siderocapsulatus: NCIMB:11286, BKM-B:N1122, DSM:7314, BCCM/LMG:16206
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 64,459 53,551 176
Protein 1,418,603 1,284,154 -
Structure 716 569 -
Genome 1 1 -
Popset 638 638 -
GEO Datasets 1,162 460 -
PubMed Central 13,127 13,127 -
Gene 80,014 11,800 -
SRA Experiments 2,350 1,635 -
Protein Clusters 8,776 8,776 -
Identical Protein Groups 646,061 621,797 -
BioProject 549 336 -
BioSample 2,677 1,970 31
Assembly 303 255 4
PubChem BioAssay 119 116 -
Taxonomy 39 1 -

Notes:

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Hill LR et al. (1984) (reference relating to orthographic revision)
Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]
Meyer JM et al. (2007)
Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.
Skerman VBD et al. (1980) (Arthrobacter siderocapsulatus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Pseudomonas putida)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Yamamoto S & Harayama S (1998)
Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.
Zhdanov AV & Dubinina GA (1975)
Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]
Chum J et al. (2001)
Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas putida meta-databases BacDive
5 records from this provider organism-specific BioCyc
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
38 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas putida culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
55 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas putida taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
3 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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