Taxonomy browser Taxonomy Browser (Pseudomonas putida)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	495	796	-
BioSample	2,785	4,638	-
GEO DataSets	555	1,366	-
Gene	11,800	80,071	-
Identical Protein Groups	913,019	939,846	-
Nucleotide	66,185	76,007	198
PubChem BioAssay	121	123	-
PMC	14,851	14,851	-
Protein	1,599,370	1,792,081	-
SRA	2,207	4,190	-
Structure	596	773	-
Taxonomy	38	38	-

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use ncbitaxon:303)

current name

Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Pseudomonas putida: ATCC : 12633 , CCUG : 12690 , CFBP : 2066 , CIP : 52.191 , DSM : 291 , HAMBI : 7 , IFO : 14164 , JCM : 13063 , JCM : 20120 , BCCM/LMG : 2257 , NBRC : 14164 , : , NCCB : 68020 , NCCB : 72006 , NCTC : 10936 , IAM : 1236 , ICPB : 2963 , NCIMB : 9494

includes:

Pseudomonas sp. KDB25

Pseudomonas sp. CT363

Pseudomonas sp. KDS 6

Pseudomonas sp. BW11M1

Pseudomonas arvilla C-1

Pseudomonas putida HK5

Pseudomonas sp. TC29-1

Pseudomonas sp. DRA525

Pseudomonas sp. GM4FR

Pseudomonas sp. UF1/2016

Pseudomonas sp. TAU2/2016

Pseudomonas sp. PT1/2016

Pseudomonas sp. FAR1/2016

Pseudomonas sp. ETC3/2016

Pseudomonas sp. ECT2/2016

Pseudomonas sp. ECT1/2016

Pseudomonas sp. PX-A-Ps.sp2

bacterium MASFP-4

bacterium ASFP-1

Pseudomonas sp. ACP_03

Pseudomonas sp. PSE3

Pseudomonas sp. B21-029

Pseudomonas sp. 11CM-F1

Pseudomonas sp. 11CM-S1

Pseudomonas sp. WMQ-7

homotypic synonym:

"Bacillus putidus" Trevisan 1889 , effective name¹⁾

"Bacillus fluorescens putidus" Flügge 1886 , effective name²⁾

NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym "Pseudomonas striata" Chester 1901 , effective name³⁾

heterotypic synonym "Pseudomonas rugosa" (Wright 1895) Chester 1901 , effective name⁴⁾

heterotypic synonym "Pseudomonas ovalis" Chester 1901 , effective name⁵⁾

heterotypic synonym "Pseudomonas incognita" Chester 1901 , effective name⁶⁾

heterotypic synonym "Pseudomonas eisenbergii" Migula 1900 , effective name⁷⁾

heterotypic synonym "Pseudomonas convexa" Chester 1901 , effective name⁸⁾

heterotypic synonym Pseudomonas arvilla

heterotypic synonym Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980): NCIMB : 11286 , BKM-B : N1122 , DSM : 7314 , BCCM/LMG : 16206

Lineage(full): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Chum J et al. (2001)

Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170

Meyer JM et al. (2007)

Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.

Hill LR et al. (1984) (reference relating to orthographic revision)

Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34(4):508-511. [No PubMed record available.]

Yamamoto S & Harayama S (1998)

Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.

Zhdanov AV & Dubinina GA (1975)

Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.