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Taxonomy browser (Pseudomonas putida)

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use NCBI:txid303)

Scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895

type strain of Pseudomonas putida: ATCC:12633
type strain of Pseudomonas putida: CCUG:12690
type strain of Pseudomonas putida: CFBP:2066
type strain of Pseudomonas putida: CIP:52.191
type strain of Pseudomonas putida: DSM:291
type strain of Pseudomonas putida: HAMBI:7
type strain of Pseudomonas putida: IFO:14164
type strain of Pseudomonas putida: JCM:13063
type strain of Pseudomonas putida: JCM:20120
type strain of Pseudomonas putida: BCCM/LMG:2257
type strain of Pseudomonas putida: NBRC:14164
type strain of Pseudomonas putida: NCAIM B.01634
type strain of Pseudomonas putida: NCCB:68020
type strain of Pseudomonas putida: NCCB:72006
type strain of Pseudomonas putida: NCTC:10936
type strain of Pseudomonas putida: IAM:1236

includes: Pseudomonas sp. ECT1/2016

includes: Pseudomonas sp. TAU2/2016

includes: Pseudomonas sp. ACP_03

includes: Pseudomonas sp. PX-A-Ps.sp2

includes: bacterium ASFP-1

includes: bacterium MASFP-4

includes: Pseudomonas sp. ECT2/2016

includes: Pseudomonas sp. ETC3/2016

includes: Pseudomonas sp. FAR1/2016

includes: Pseudomonas sp. PT1/2016

includes: Pseudomonas sp. KDB25

includes: Pseudomonas sp. UF1/2016

includes: Pseudomonas arvilla C-1

includes: Pseudomonas putida HK5

includes: Pseudomonas sp. BW11M1

includes: Pseudomonas sp. CT363

includes: Pseudomonas sp. DRA525

includes: Pseudomonas sp. GM4FR

includes: Pseudomonas sp. KDS 6

includes: Pseudomonas sp. TC29-1

Inherited blast name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

synonym:	"Bacillus fluorescens putidus" Flugge 1886, effective name¹⁾
synonym:	"Bacillus putidus" Trevisan 1889, effective name¹⁾
synonym:	"Pseudomonas eisenbergii" Migula 1900, effective name¹⁾
synonym:	"Pseudomonas convexa" Chester 1901, effective name¹⁾
synonym:	"Pseudomonas incognita" Chester 1901, effective name¹⁾
synonym:	"Pseudomonas ovalis" Chester 1901, effective name¹⁾
synonym:	"Pseudomonas rugosa" (Wright 1895) Chester 1901, effective name¹⁾
synonym:	"Pseudomonas striata" Chester 1901, effective name¹⁾
synonym:	**Pseudomonas arvilla**
synonym:	Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980), nom. approb.²⁾
	current: **Arthrobacter siderocapsulatus** Dubinin (sic) and Zhdanov 1975

Lineage( full ): cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group

Entrez records
Database name	Subtree links	Direct links
Nucleotide	40,034	28,733
Nucleotide GSS	19	19
Protein	783,488	626,039
Structure	603	503
Genome	1	1
Popset	612	612
GEO Datasets	660	272
PubMed Central	8,351	8,351
Gene	68,889	6,406
SRA Experiments	519	219
Protein Clusters	8,776	8,776
Identical Protein Groups	348,213	314,106
Bio Project	245	120
Bio Sample	1,142	785
Bio Systems	3,099	253
Assembly	126	79
Probe	8	5
PubChem BioAssay	100	99
Taxonomy	40	1

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).
2) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Chum J et al. (2001): Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170

Hill LR et al. (1984) (reference relating to orthographic revision): Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34:508-511. [No PubMed record available.]

Meyer JM et al. (2007): Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.

Skerman VBD et al. (1980) (Arthrobactersiderocapsulatus): Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Skerman VBD et al. (1980) (Pseudomonas putida): Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Yamamoto S & Harayama S (1998): Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.

Zhdanov AV & Dubinina GA (1975): Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pseudomonas putida	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
38 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Pseudomonas putida	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
37 records from this provider	organism-specific	Integrated Microbial Genomes
Pseudomonas putida	taxonomy/phylogenetic	Lifemap
Pseudomonas putida (taxon passport)	culture/stock collections	StrainInfo
3 records from this provider	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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