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Taxonomy browser (Pseudomonas putida)

Pseudomonas putida

Taxonomy ID: 303 (for references in articles please use NCBI:txid303)
Scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
type strain of Pseudomonas putida: ATCC:12633
type strain of Pseudomonas putida: CCUG:12690
type strain of Pseudomonas putida: CFBP:2066
type strain of Pseudomonas putida: CIP:52.191
type strain of Pseudomonas putida: DSM:291
type strain of Pseudomonas putida: HAMBI:7
type strain of Pseudomonas putida: IFO:14164
type strain of Pseudomonas putida: JCM:13063
type strain of Pseudomonas putida: JCM:20120
type strain of Pseudomonas putida: BCCM/LMG:2257
type strain of Pseudomonas putida: NBRC:14164
type strain of Pseudomonas putida: NCAIM B.01634
type strain of Pseudomonas putida: NCCB:68020
type strain of Pseudomonas putida: NCCB:72006
type strain of Pseudomonas putida: NCTC:10936
type strain of Pseudomonas putida: IAM:1236
includes: Pseudomonas sp. ECT1/2016
includes: Pseudomonas sp. TAU2/2016
includes: Pseudomonas sp. ACP_03
includes: Pseudomonas sp. PX-A-Ps.sp2
includes: bacterium ASFP-1
includes: bacterium MASFP-4
includes: Pseudomonas sp. ECT2/2016
includes: Pseudomonas sp. ETC3/2016
includes: Pseudomonas sp. FAR1/2016
includes: Pseudomonas sp. PT1/2016
includes: Pseudomonas sp. KDB25
includes: Pseudomonas sp. UF1/2016
includes: Pseudomonas arvilla C-1
includes: Pseudomonas putida HK5
includes: Pseudomonas sp. BW11M1
includes: Pseudomonas sp. CT363
includes: Pseudomonas sp. DRA525
includes: Pseudomonas sp. GM4FR
includes: Pseudomonas sp. KDS 6
includes: Pseudomonas sp. TC29-1
Inherited blast name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Bacillus fluorescens putidus" Flugge 1886, effective name 1)
synonym: "Bacillus putidus" Trevisan 1889, effective name 1)
synonym: "Pseudomonas eisenbergii" Migula 1900, effective name 1)
synonym: "Pseudomonas convexa" Chester 1901, effective name 1)
synonym: "Pseudomonas incognita" Chester 1901, effective name 1)
synonym: "Pseudomonas ovalis" Chester 1901, effective name 1)
synonym: "Pseudomonas rugosa" (Wright 1895) Chester 1901, effective name 1)
synonym: "Pseudomonas striata" Chester 1901, effective name 1)
synonym: Pseudomonas arvilla
synonym: Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980), nom. approb. 2)
 
current: Arthrobacter siderocapsulatus Dubinin (sic) and Zhdanov 1975
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 40,034 28,733
Nucleotide GSS 19 19
Protein 783,488 626,039
Structure 603 503
Genome 1 1
Popset 612 612
GEO Datasets 660 272
PubMed Central 8,351 8,351
Gene 68,889 6,406
SRA Experiments 519 219
Protein Clusters 8,776 8,776
Identical Protein Groups 348,213 314,106
Bio Project 245 120
Bio Sample 1,142 785
Bio Systems 3,099 253
Assembly 126 79
Probe 8 5
PubChem BioAssay 100 99
Taxonomy 40 1

Notes:

Comments and References:

Reference to PubMed documentChum J et al. (2001)
Chun, J., Rhee, M.S., Han, J.I., Bae, K.S. "Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a later subjective synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL." Int. J. Syst. Evol. Microbiol. (2001) 51:169-170

Nota BeneHill LR et al. (1984) (reference relating to orthographic revision)
Hill, L.R., Skerman, V.B.D., and Sneath, P.H.A. "Corrigenda to the Approved Lists of Bacterial Names edited for the International Committee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1984) 34:508-511. [No PubMed record available.]

Reference to PubMed documentMeyer JM et al. (2007)
Meyer, J.-M., Gruffaz, C., Tulkki, T., and Izard, D. "Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida." Int. J. Syst. Evol. Microbiol. (2007) 57:2543-2556.

Nota BeneSkerman VBD et al. (1980) (Arthrobactersiderocapsulatus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Nota BeneSkerman VBD et al. (1980) (Pseudomonas putida)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Reference to PubMed documentYamamoto S & Harayama S (1998)
Yamamoto, S., and Harayama, S. "Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes." Int. J. Syst. Bacteriol. (1998) 48:813-819.

Reference to PubMed documentZhdanov AV & Dubinina GA (1975)
Zhdanov, A.V., and Dubinina, G.A. "[Arthrobacter siderocapsulatus isolated from lake water.]" Mikrobiologiya (1975) 44:714-719. [in Russian]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas putida meta-databases BacDive
2 records from this provider organism-specific BioCyc
Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
38 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas putida culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
37 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas putida taxonomy/phylogenetic Lifemap
Pseudomonas putida (taxon passport) culture/stock collections StrainInfo
3 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
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