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Taxonomy browser (Micromonas commoda)

Micromonas commoda

Taxonomy ID: 296587 (for references in articles please use NCBI:txid296587)
Scientific name: Micromonas commoda van Baren, Bachy & Worden, 2016
type material of Micromonas commoda: RCC:299
holotype of Micromonas commoda: CCMP:2709
includes: Micromonas pusilla NOUM17
includes: Micromonas pusilla RCC299
includes: Micromonas sp. CCMP1195
includes: Micromonas sp. RCC 299
includes: Micromonas sp. CCMP1764
includes: Micromonas sp. CCMP492
includes: Micromonas sp. NEPCC29
includes: Micromonas sp. RCC299
includes: Micromonas sp. RCC372
includes: Micromonas sp. RCC447
includes: Micromonas sp. RCC448
includes: Micromonas sp. RCC449
includes: Micromonas sp. RCC450
includes: Micromonas sp. RCC472
includes: Micromonas sp. RCC570
includes: Micromonas sp. RCC676
includes: Micromonas sp. RCC803
includes: Micromonas sp. RCC804
includes: Micromonas sp. RCC805
includes: Micromonas sp. RCC808
includes: Micromonas sp. RCC836
Inherited blast name: green algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
   Entrez records   
Database name Direct links
Nucleotide 10,142
Protein 20,306
Structure 4
Genome 1
Popset 6
PubMed Central 17
Gene 10,128
SRA Experiments 58
Protein Clusters 7,435
Identical Protein Groups 10,140
Bio Project 42
Bio Sample 52
Bio Systems 200
Assembly 1
Taxonomy 1

Comments and References:

Nota Benevan Baren MJ et al. 2016
van Baren MJ et al. 2016. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics201617:267 DOI: http://dx.doi.org/10.1186/s12864-016-2585-6

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Nota BeneSimon N et al. 2017
Simon N, Foulon E, Grulois D, Six C, Desdevises Y, Latimier M, Le Gall F, Tragin M, Houdan A, Derelle E, Jouenne F, Marie D, Le Panse S, Vaulot D and Marin B. 2017. Revision of the genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the type species M. pusilla (Butcher) Manton & Parke and of the species M. commoda van Baren, Bachy and Worden and description of two new species based on the genetic and phenotypic characterization of cultured isolates. Protist 168,612-635. Published online: 14 September 2017. DOI: https://doi.org/10.1016/j.protis.2017.09.002


Genome Information

Go to NCBI genomic BLAST page for Micromonas commoda
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
338,691 338,691
Totals per type
338,691 338,691

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
3 records from this provider organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
WebScipio: Micromonas pusilla NOUM17 organism-specific WebScipio - eukaryotic gene identification
diArk: Micromonas pusilla NOUM17 organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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