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Taxonomy browser (Micromonas commoda)

Micromonas commoda

Taxonomy ID: 296587 (for references in articles please use NCBI:txid296587)
current name
Micromonas commoda van Baren, Bachy & Worden, 2016
holotype of Micromonas commoda: CCMP:2709
type material of Micromonas commoda: RCC:299
includes:
Micromonas pusilla NOUM17
Micromonas pusilla RCC299
Micromonas sp. CCMP1195
Micromonas sp. RCC 299
Micromonas sp. CCMP1764
Micromonas sp. CCMP492
Micromonas sp. NEPCC29
Micromonas sp. RCC299
Micromonas sp. RCC372
Micromonas sp. RCC447
Micromonas sp. RCC448
Micromonas sp. RCC449
Micromonas sp. RCC450
Micromonas sp. RCC472
Micromonas sp. RCC570
Micromonas sp. RCC676
Micromonas sp. RCC803
Micromonas sp. RCC804
Micromonas sp. RCC805
Micromonas sp. RCC808
Micromonas sp. RCC836
NCBI BLAST name: green algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
   Entrez records   
Database name Direct links Links from type
Nucleotide 10,167 10,091
Protein 20,328 -
Structure 4 -
Genome 1 -
Popset 8 -
GEO Datasets 17 -
PubMed Central 56 -
Gene 10,128 -
SRA Experiments 81 -
Protein Clusters 7,435 -
Identical Protein Groups 10,140 -
Bio Project 44 -
Bio Sample 71 20
Bio Systems 200 -
Assembly 1 1
Taxonomy 1 -

Comments and References:

van Baren MJ et al. 2016, doi:10.1186/s12864-016-2585-6
van Baren MJ et al. 2016. Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics201617:267 DOI: http://dx.doi.org/10.1186/s12864-016-2585-6
genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Simon N et al. 2017, doi:10.1016/j.protis.2017.09.002
Simon N, Foulon E, Grulois D, Six C, Desdevises Y, Latimier M, Le Gall F, Tragin M, Houdan A, Derelle E, Jouenne F, Marie D, Le Panse S, Vaulot D and Marin B. 2017. Revision of the genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the type species M. pusilla (Butcher) Manton & Parke and of the species M. commoda van Baren, Bachy and Worden and description of two new species based on the genetic and phenotypic characterization of cultured isolates. Protist 168,612-635. Published online: 14 September 2017. DOI: https://doi.org/10.1016/j.protis.2017.09.002

Genome Information

Go to NCBI genomic BLAST page for Micromonas commoda

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
3 records from this provider organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
WebScipio: Micromonas pusilla NOUM17 organism-specific WebScipio - eukaryotic gene identification
diArk: Micromonas pusilla NOUM17 organism-specific diArk - a resource for eukaryotic genome research
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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