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Taxonomy browser (Pseudomonas)


Taxonomy ID: 286 (for references in articles please use NCBI:txid286)
Scientific name: Pseudomonas Migula 1894 emend. Yang et al. 2013
homotypic synonym: "Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)
Inherited blast name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Loefflerella" Holden 1935
synonym: "Liquidomonas" Orla-Jensen 1909
synonym: RNA similarity group I
includes: Chryseomonas Holmes et al. 1986
includes: Serpens Hespell 1977
includes: Flavimonas
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 2,106,752 85
Nucleotide EST 9 -
Nucleotide GSS 34,268 -
Protein 24,236,684 974,158
Structure 3,070 9
Genome 192 1
Popset 6,296 5,506
Conserved Domains 48 30
GEO Datasets 3,971 16
PubMed Central 91,161 91,044
Gene 452,926 -
SRA Experiments 14,770 61
GEO Profiles 141,600 -
Protein Clusters 34,842 20,608
Identical Protein Groups 6,451,981 974,566
Bio Project 3,571 40
Bio Sample 20,624 90
Bio Systems 25,456 -
Assembly 6,087 -
Probe 846 6
PubChem BioAssay 9,323 72
Taxonomy 26,952 1

Comments and References:

Pseudomonas sensu stricto
The genus Pseudomonas is defined here to include the fluorescent pseudomonads and their non-fluorescent relatives, identified by Palleroni et al. (1973) as "rRNA similarity group I".

Nota BenePseudomonas (LPSN link)

Nota BeneChryseomonas (LPSN link)

Nota BeneFlavimonas (LPSN link)

Nota BeneSerpens (LPSN link)

Reference to PubMed documentAit Tayeb L et al. (2005)
Ait Tayeb, L., Ageron, E., Grimont, F., and Grimont, P.A. "Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates." Res. Microbiol. (2005) 156:763-773.

Reference to PubMed documentAnzai Y et al. (1997)
Anzai, Y., Kudo, Y., and Oyaizu, H. "The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera." Int. J. Syst. Bacteriol. (1997) 47:249-251.

Reference to PubMed documentAnzai Y et al. (2000)
Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., and Oyaizu, H. "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence." Int. J. Syst. Evol. Microbiol. (2000) 50:1563-1589.

Nota BeneHespell RB (1977)
Hespell, R.B. "Serpens flexibilis gen. nov., sp. nov., an unusually flexible, lactate-oxidizing bacterium." Int. J. Syst. Bacteriol. (1977) 27:371-381. [No PubMed record available.]

Nota BeneHolmes B et al. (1986)
Holmes, B., Steigerwalt, A.G., Weaver, R.E., and Brenner, D.J. "Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-like organism from human clinical specimens and formerly known as group Ve-1." Int. J. Syst. Bacteriol. (1986) 36:161-165. [No PubMed record available.]

Reference to PubMed documentKessler B & Palleroni NJ (2000)
Kessler, B., and Palleroni, N.J. "Taxonomic implications of synthesis of poly-beta-hydroxybutyrate and other poly-beta-hydroxyalkanoates by aerobic pseudomonads." Int. J. Syst. Evol. Microbiol. (2000) 50:711-713.

Reference to PubMed documentOchi K (1995b)
Ochi, K. "Comparative ribosomal protein sequence analyses of a phylogenetically defined genus, Pseudomonas, and its relatives." Int. J. Syst. Bacteriol. (1995) 45:268-273.

Nota BenePalleroni NJ et al. (1973)
Palleroni, N.J., Kunisawa, R., Contopoulou, R., and Doudoroff, M. "Nucleic acid homologies in the genus Pseudomonas." Int. J. Syst. Bacteriol. (1973) 23:333-339. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Reference to PubMed documentYang G et al. (2013e)
Yang, G., Han, L., Wen, J., and Zhou, S. "Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894." Int. J. Syst. Evol. Microbiol. (2013) 63:4599-4605.

Reference to PubMed documentYoung JM & Park DC (2007)
Young, J.M., and Park, D.-C. "Probable synonymy of the nitrogen-fixing genus Azotobacter and the genus Pseudomonas." Int. J. Syst. Evol. Microbiol. (2007) 57:2894-2901.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chryseomonas taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas culture/stock collections Global Catalogue of Microorganisms
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Pseudomonas taxonomy/phylogenetic Integrated Taxonomic Information System
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LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Pseudomonas taxonomy/phylogenetic Ocean Biogeographic Information System
Pseudomonas sp. (taxon passport) culture/stock collections StrainInfo
Pseudomonas Migula, 1894 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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