Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Pseudomonas)

Pseudomonas

Taxonomy ID: 286 (for references in articles please use NCBI:txid286)
current name
Pseudomonas Migula 1894 emend. Yang et al. 2013
homotypic synonym:
"Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)
includes:
Flavimonas
Serpens Hespell 1977
Chryseomonas Holmes et al. 1986
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
RNA similarity group I
heterotypic synonym
"Liquidomonas" Orla-Jensen 1909, effective name 1)
heterotypic synonym
"Loefflerella" Holden 1935, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 4,604,984 514
Protein 47,690,631 1,563,518
Structure 4,092 15
Genome 361 1
Popset 6,635 5,414
Conserved Domains 67 47
GEO Datasets 10,509 16
PubMed Central 170,601 170,537
Gene 1,171,385 -
SRA Experiments 55,967 591
GEO Profiles 141,600 -
Protein Clusters 34,842 20,608
Identical Protein Groups 15,601,678 1,567,476
BioProject 7,126 135
BioSample 73,525 458
Assembly 28,266 -
PubChem BioAssay 13,114 81
Taxonomy 29,012 1

Notes:

Comments and References:

Pseudomonas sensu stricto
The genus Pseudomonas is defined here to include the fluorescent pseudomonads and their non-fluorescent relatives, identified by Palleroni et al. (1973) as "rRNA similarity group I".
Pseudomonas (LPSN link)
Chryseomonas (LPSN link)
Flavimonas (LPSN link)
Serpens (LPSN link)
Ait Tayeb L et al. (2005)
Ait Tayeb, L., Ageron, E., Grimont, F., and Grimont, P.A. "Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates." Res. Microbiol. (2005) 156:763-773.
Anzai Y et al. (1997)
Anzai, Y., Kudo, Y., and Oyaizu, H. "The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera." Int. J. Syst. Bacteriol. (1997) 47:249-251.
Anzai Y et al. (2000)
Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., and Oyaizu, H. "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence." Int. J. Syst. Evol. Microbiol. (2000) 50:1563-1589.
Hespell RB (1977)
Hespell, R.B. "Serpens flexibilis gen. nov., sp. nov., an unusually flexible, lactate-oxidizing bacterium." Int. J. Syst. Bacteriol. (1977) 27:371-381. [No PubMed record available.]
Holmes B et al. (1986)
Holmes, B., Steigerwalt, A.G., Weaver, R.E., and Brenner, D.J. "Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-like organism from human clinical specimens and formerly known as group Ve-1." Int. J. Syst. Bacteriol. (1986) 36:161-165. [No PubMed record available.]
Kessler B & Palleroni NJ (2000)
Kessler, B., and Palleroni, N.J. "Taxonomic implications of synthesis of poly-beta-hydroxybutyrate and other poly-beta-hydroxyalkanoates by aerobic pseudomonads." Int. J. Syst. Evol. Microbiol. (2000) 50:711-713.
Ochi K (1995b)
Ochi, K. "Comparative ribosomal protein sequence analyses of a phylogenetically defined genus, Pseudomonas, and its relatives." Int. J. Syst. Bacteriol. (1995) 45:268-273.
Palleroni NJ et al. (1973)
Palleroni, N.J., Kunisawa, R., Contopoulou, R., and Doudoroff, M. "Nucleic acid homologies in the genus Pseudomonas." Int. J. Syst. Bacteriol. (1973) 23:333-339. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Yang G et al. (2013e)
Yang, G., Han, L., Wen, J., and Zhou, S. "Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894." Int. J. Syst. Evol. Microbiol. (2013) 63:4599-4605.
Young JM & Park DC (2007)
Young, J.M., and Park, D.-C. "Probable synonymy of the nitrogen-fixing genus Azotobacter and the genus Pseudomonas." Int. J. Syst. Evol. Microbiol. (2007) 57:2894-2901.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chryseomonas taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
Pseudomonas culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
42 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas taxonomy/phylogenetic Integrated Taxonomic Information System
Pseudomonas taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Pseudomonas taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]