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Taxonomy browser (Pediococcus pentosaceus ATCC 25745)

Pediococcus pentosaceus ATCC 25745

Taxonomy ID: 278197 (for references in articles please use NCBI:txid278197)
Scientific name: Pediococcus pentosaceus ATCC 25745
Inherited blast name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
equivalent name: Pediococcus pentosaceus str. ATCC 25745
equivalent name: Pediococcus pentosaceus strain ATCC 25745
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Pediococcus; Pediococcus pentosaceus
   Entrez records   
Database name Direct links
Nucleotide 277
Protein 3,970
Structure 6
Genome 1
PubMed Central 6
Gene 3,667
Bio Project 2
Bio Sample 1
Bio Systems 128
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentMakarova K et al. (2006)
Makarova, K., Slesarev, A., Wolf, Y., Sorokin, A., Mirkin, B., Koonin, E., Pavlov, A., Pavlova, N., Karamychev, V., Polouchine, N., Shakhova, V., Grigoriev, I., Lou, Y., Rohksar, D., Lucas, S., Huang, K., Goodstein, D.M., Hawkins, T., Plengvidhya, V., Welker, D., Hughes, J., Goh, Y., Benson, A., Baldwin, K., Lee, J.H., Diaz-Muniz, I., Dosti, B., Smeianov, V., Wechter, W., Barabote, R., Lorca, G., Altermann, E., Barrangou, R., Ganesan, B., Xie, Y., Rawsthorne, H., Tamir, D., Parker, C., Breidt, F., Broadbent, J., Hutkins, R., O'sullivan, D., Steele, J., Unlu, G., Saier, M., Klaenhammer, T., Richardson, P., Kozyavkin, S., Weimer, B., and Mills, D. "Comparative genomics of the lactic acid bacteria." Proc. Natl. Acad. Sci. USA (2006) 103:15611-15616.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
55,696 55,696
Totals per type
55,696 55,696

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pediococcus pentosaceus meta-databases BacDive
Pediococcus pentosaceus ATCC 25745 organism-specific BioCyc
GOLD: Go0000283 organism-specific Genomes On Line Database
639633049: Pediococcus pentosaceus ATCC 25745 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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