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Taxonomy browser (Treponema pallidum subsp. pallidum str. Nichols)

Treponema pallidum subsp. pallidum str. Nichols

Taxonomy ID: 243276 (for references in articles please use NCBI:txid243276)
current name
Treponema pallidum subsp. pallidum str. Nichols
Treponema pallidum Nichols
NCBI BLAST name: spirochetes
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum
   Entrez records   
Database name Direct links
Nucleotide 110
Protein 3,895
Structure 21
Genome 1
Popset 25
Gene 2,196
SRA Experiments 151
Identical Protein Groups 1,515
BioProject 5
BioSample 159
Assembly 3
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Fraser CM et al. (1998)
Fraser, C.M., Norri,s .S.J, Weinstock, G.M., White, O., Sutton, G.G., Dodson, R., Gwinn, M., Hickey, E.K., Clayton, R., Ketchum, K.A., Sodergren, E., Hardham, J.M., McLeod, M.P., Salzberg, S., Peterson, J., Khalak, H., Richardson, D., Howell, J.K., Chidambaram, M., Utterback, T., McDonald, L., Artiach, P., Bowman, C., Cotton, M.D., Fujii, C., Garland, S., Hatch, B., Horst, K., Roberts, K., Sandusky, M., Weidman, J., Smith, H.O., and Venter, J.C. "Complete genome sequence of Treponema pallidum, the syphilis spirochete." Science (1998) 281:375-388.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Treponema pallidum Nichols organism-specific BioCyc
GOLD: Go0000773 organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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