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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 30 36 -
BioSample 116 127 -
GEO DataSets 10 15 -
Gene 12,310 25,044 -
Identical Protein Groups 43,839 43,864 -
Nucleotide 3,131 3,789 301
PubChem BioAssay 4 4 -
PMC 1,631 1,631 -
Protein 74,371 74,895 -
SRA 86 107 -
Structure 7 18 -
Taxonomy 8 8 -

Shewanella putrefaciens

Taxonomy ID: 24 (for references in articles please use ncbitaxon:24)
current name
Shewanella putrefaciens  (Lee et al. 1981) MacDonell and Colwell 1986 emend. Thorell et al. 2019
homotypic synonym:
"Pseudomonas putrefaciens"  (Derby and Hammer) Long and Hammer 1941 , effective name  1)
basionym:
Alteromonas putrefaciens  (ex Derby and Hammer) Lee et al. 1981
type strain of Alteromonas putrefaciens: ATCC : 8071 , CCUG : 13452 D , CFBP : 3033 , CFBP : 3034 , CIP : 80.40 , DSM : 6067 , IFO : 3908 , JCM : 20190 , JCM : 9294 , BCCM/LMG : 2268 , NBRC : 3908 , NCIMB : 10471 , NCTC : 12960 , personal : Hammer 95
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella

Notes:

Comments and References:

Derby HA & Hammer BW (1931)
Derby, H.A., and Hammer, B.W. "Bacteriology of butter. IV. Bacteriological studies on surface taint butter." Iowa Agric. Exp. Stn. Res. Bull. (1931) 145:389-416. [No PubMed record available.]
Lee JV et al. (1977)
Lee, J.V., Gibson, D.M., and Shewan, J.M. "A numerical taxonomic study of some Pseudomonas-like marine bacteria." J. Gen. Microbiol. (1977) 98:439-451. [No PubMed record available.]
Long HF & Hammer BW (1941)
Long, H.F., and Hammer, B.W. "Distribution of Pseudomonas putrefaciens." J. Bacteriol. (1941) 41:100-101. [No PubMed record available.]
MacDonell MT & Colwell RR (1985)
MacDonell, M.T., and Colwell, R.R. "Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella." Syst. Appl. Microbiol. (1985) 6(2):171-182.
Reid GA & Gordon EH (1999)
Reid, G.A., and Gordon, E.H. "Phylogeny of marine and freshwater Shewanella: reclassification of Shewanella putrefaciens NCIMB 400 as Shewanella frigidimarina." Int. J. Syst. Bacteriol. (1999) 49:189-191.
Thorell K et al. (2019)
Thorell, K., Meier-Kolthoff, J.P., Sjöling, Å, and Martín-Rodríguez, A.J. "Whole-genome sequencing redefines Shewanella taxonomy." Front. Microbiol. (2019) 10:1861.
VALIDATION LIST No. 6 (1981) (Alteromonas putrefaciens)
VALIDATION LIST No. 6. Int. J. Syst. Bacteriol. (1981) 31:215-218.
VALIDATION LIST No. 20 (1986)
VALIDATION LIST No. 20. Int. J. Syst. Bacteriol. (1986) 36:354-356.
Venkateswaran K et al. (1999)
Venkateswaran, K., Moser, D.P., Dollhopf, M.E., Lies, D.P., Saffarini, D.A., MacGregor, B.J., Ringelberg, D.B., White, D.C., Nishijima, M., Sano, H., Burghardt, J., Stackebrandt, E., and Nealson, K.H. "Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov." Int. J. Syst. Bacteriol. (1999) 49:705-724.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shewanella putrefaciens type strain (BD-ID 14054) meta-databases BacDive
Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986 taxonomy/phylogenetic Encyclopedia of life
GOLD: 12 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Shewanella putrefaciens culture/stock collections Global Catalogue of Microorganisms
2919497567: Shewanella putrefaciens 3469 organism-specific Integrated Microbial Genomes
8104553738: Shewanella putrefaciens DSM 50426 organism-specific Integrated Microbial Genomes
8111607417: Shewanella putrefaciens ATCC 8071 organism-specific Integrated Microbial Genomes
8003785718: Shewanella putrefaciens CGMCC-1.6515 organism-specific Integrated Microbial Genomes
2823267113: Shewanella putrefaciens NCTC 10695 organism-specific Integrated Microbial Genomes
2823885149: Shewanella putrefaciens WS13 organism-specific Integrated Microbial Genomes
2859001387: Shewanella putrefaciens NCTC 10738 organism-specific Integrated Microbial Genomes
Shewanella putrefaciens (Derby & Hammer, 1931) MacDonell & Colwell, 1985 taxonomy/phylogenetic Ocean Biogeographic Information System
Alteromonas putrefaciens Lee, Gibson & Shewan, 1977 taxonomy/phylogenetic Ocean Biogeographic Information System
Shewanella putrefaciens type strain (SI-ID 4969) meta-databases StrainInfo, Leibniz Institute DSMZ
Shewanella putrefaciens (Derby & Hammer, 1931) MacDonell & Colwell, 1985 taxonomy/phylogenetic World Register of Marine Species
Alteromonas putrefaciens Lee, Gibson & Shewan, 1977 taxonomy/phylogenetic World Register of Marine Species
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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