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Taxonomy browser (Akkermansia muciniphila)

Akkermansia muciniphila

Taxonomy ID: 239935 (for references in articles please use NCBI:txid239935)
current name
Akkermansia muciniphila Derrien et al. 2004 emend. Hahnke et al. 2016
type strain of Akkermansia muciniphila: ATCC:BAA-835, CIP:107961, personal::Muc, DSM:22959
Akkermansia sp. YL44
NCBI BLAST name: verrucomicrobia
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 180,471 180,174 13
Protein 481,857 475,038 -
Structure 32 11 -
Genome 2 1 -
Popset 4 4 -
GEO Datasets 4 1 -
PubMed Central 6,977 6,977 -
Gene 9,412 4,777 -
SRA Experiments 448 393 -
Protein Clusters 782 782 -
Identical Protein Groups 116,139 115,362 -
BioProject 196 186 -
BioSample 3,510 3,468 7
Assembly 1,702 1,699 3
Taxonomy 3 1 -

Comments and References:

Derrien M et al. (2004)
Derrien, M., Vaughan, E.E., Plugge, C.M., and de Vos, W.M. "Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium." Int. J. Syst. Evol. Microbiol. (2004) 54:1469-1476.
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Akkermansia muciniphila meta-databases BacDive
22 records from this provider organism-specific BioCyc
Akkermansia muciniphila Derrien et al. 2004 taxonomy/phylogenetic Encyclopedia of life
GOLD Multi-Isolate Organism: Go0454689 organism-specific Genomes On Line Database
122 records from provider organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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