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Taxonomy browser (Halobacteriaceae)

Halobacteriaceae

Taxonomy ID: 2236 (for references in articles please use NCBI:txid2236)
Scientific name: Halobacteriaceae Gibbons 1974 (Approved Lists 1980) emend. Gupta et al. 2016, nom. approb. 1)
current: Halobacteriaceae Gibbons 1974 emend. Gupta et al. 2015
Inherited blast name: euryarchaeotes
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Haloarchaeaceae" DasSarma and DasSarma 2008, effective name 2)
Lineage( full )
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales
   Entrez records   
Database name Subtree links Direct links
Nucleotide 8,350 -
Protein 159,060 18
Structure 179 -
Genome 25 -
Popset 164 129
Conserved Domains 36 34
GEO Datasets 2,563 -
PubMed Central 3,134 281
Gene 25,915 -
SRA Experiments 76 -
Protein Clusters 4,504 1
Identical Protein Groups 94,427 18
Bio Project 142 -
Bio Sample 381 -
Bio Systems 850 -
Assembly 45 -
Probe 73 -
Taxonomy 605 1

Notes:

Comments and References:

Reference to PubMed documentDasSarma P & DasSarma S (2008)
DasSarma, P., and DasSarma, S. "On the origin of prokaryotic 'species': the taxonomy of halophilic Archaea." Saline Systems (2008) 4:5.

Reference to PubMed documentEnache M et al. (2007b)
Enache, M., Itoh, T., Fukushima, T., Usami, R., Dumitru, L., and Kamekura, M. "Phylogenetic relationships within the family Halobacteriaceae inferred from rpoB' gene and protein sequences." Int. J. Syst. Evol. Microbiol. (2007) 57:2289-2295.

Gibbons NE (1974)
Gibbons, N.E. "Family V. Halobacteriaceae Fam. nov." In: R.E. Buchanan and N.E. Gibbons (eds.), Bergey's Manual of Determinative Bacteriology, eighth edition. The Williams & Wilkins Co, Baltimore (1974) p. 269. [No PubMed record available.]

Reference to PubMed documentGupta RS et al. (2015)
Gupta, R.S., Naushad, S., and Baker, S. "Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov. and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov. and Natrialbaceae fam. nov." Int. J. Syst. Evol. Microbiol. (2015) 65:1050-1069.

Reference to PubMed documentGupta RS et al. (2016)
Gupta, R.S., Naushad, S., Fabros, R., and Adeolu, M. "A phylogenomic reappraisal of family-level divisions within the class Halobacteria: proposal to divide the order Halobacteriales into the families Halobacteriaceae, Haloarculaceae fam. nov., and Halococcaceae fam. nov., and the order Haloferacales into the families, Haloferacaceae and Halorubraceae fam (sic) nov." Antonie van Leeuwenhoek (2016) 109:565-587. [Erratum: Antonie van Leeuwenhoek (2016) 109:1521-1523.]

Nota BeneList of Changes in Taxonomic Opinion No. 24 (2016)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2016) 66:2469-2470.

Nota BeneList of Changes in Taxonomic Opinion No. 25 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:7-8.

Reference to PubMed documentMinegishi H et al. (2010)
Minegishi, H., Kamekura, M., Itoh, T., Echigo, A., Usami, R., and Hashimoto, T. "Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B' (rpoB') gene." Int. J. Syst. Evol. Microbiol. (2010) 60:2398-2408.

Reference to PubMed documentMinegishi H et al. (2012)
Minegishi, H., Kamekura, M., Kitajima-Ihara, T., Nakasone, K., Echigo, A., Shimane, Y., Usami, R., Itoh, T., and Ihara, K. "Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups." Int. J. Syst. Evol. Microbiol. (2012) 62:188-195.

Reference to PubMed documentOren A (2008)
Oren, A. "Nomenclature and taxonomy of halophilic archaea--comments on the proposal by DasSarma and DasSarma for nomenclatural changes within the order Halobacteriales." Int. J. Syst. Evol. Microbiol. (2008) 58:2245-2246.

Reference to PubMed documentOren A (2012)
Oren, A. "Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics." Int. J. Syst. Evol. Microbiol. (2012) 62:263-271.

Reference to PubMed documentOren A & Ventosa A (2000)
Oren, A., and Ventosa, A. "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia." Int. J. Syst. Evol. Microbiol. (2000) 50:1405-1407. [No abstract available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Halobacteriaceae taxonomy/phylogenetic Encyclopedia of life
46 records from this provider organism-specific Integrated Microbial Genomes
Halobacteriaceae taxonomy/phylogenetic Lifemap
Halobacteriaceae sp. (taxon passport) culture/stock collections StrainInfo
Halobacteriaceae taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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