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Taxonomy browser (Pseudomonas syringae pv. tomato str. DC3000)

Pseudomonas syringae pv. tomato str. DC3000

Taxonomy ID: 223283 (for references in articles please use NCBI:txid223283)
current name
Pseudomonas syringae pv. tomato str. DC3000
equivalent:
Pseudomonas syringae DC3000
Pseudomonas syringae pv. tomato DC3000
NCBI BLAST name: g-proteobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pseudomonas syringae pv. tomato str. ATCC BAA-871
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 3; Pseudomonas syringae pv. tomato
   Entrez records   
Database name Direct links Links from type
Nucleotide 469 14
Protein 12,187 -
Structure 40 -
Genome 1 -
Popset 5 -
GEO Datasets 301 -
Gene 6,475 -
SRA Experiments 290 -
Identical Protein Groups 6,556 -
BioProject 116 -
BioSample 291 119
Assembly 1 1
PubChem BioAssay 1 -
Taxonomy 1 -

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Buell CR et al. (2003)
Buell, C.R., Joardar, V., Lindeberg, M., Selengut, J., Paulsen, I.T., Gwinn, M.L., Dodson, R.J., Deboy, R.T., Durkin, A.S., Kolonay, J.F., Madupu, R., Daugherty, S., Brinkac, L., Beanan, M.J., Haft, D.H., Nelson, W.C., Davidsen, T., Zafar, N., Zhou, L., Liu, J., Yuan, Q., Khouri, H., Fedorova, N., Tran, B., Russell, D., Berry, K., Utterback, T., Van Aken, S.E., Feldblyum, T.V., D'Ascenzo, M., Deng, W.L., Ramos, A.R., Alfano, J.R., Cartinhour, S., Chatterjee, A.K., Delaney, T.P., Lazarowitz, S.G., Martin, G.B., Schneider, D.J., Tang, X., Bender, C.L., White, O., Fraser, C.M., and Collmer, A. "The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Proc. Natl. Acad. Sci. USA (2003) 100:10181-10186. Published online 19 August 2003: DOI 10.1073/pnas.1731982100

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas syringae DC3000 organism-specific BioCyc
GOLD: Go0000618 organism-specific Genomes On Line Database
2508501074: Pseudomonas syringae pv. tomato DC3000 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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