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Taxonomy browser (Helicobacter pylori)

Helicobacter pylori

Taxonomy ID: 210 (for references in articles please use NCBI:txid210)
current name
Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989
type strain of Helicobacter pylori: ATCC:43504, CCUG:15815 B, CCUG:17874, CCUG:39500, CIP:103995, DSM:4867, JCM:12093, BCCM/LMG:18041, BCCM/LMG:19449, NCTC:11637, personal::Royal Perth Hospital 13487, DSM:21031
homotypic synonym:
Campylobacter pylori subsp. pylori Marshall et al. 1985
Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987
Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988
Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989
NCBI BLAST name: e-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Campylobacter pyloridis Marshall et al.1985
heterotypic synonym
Helicobacter nemestrinae Bronsdon et al. 1991
type strain of Helicobacter nemestrinae: ATCC:49396, personal::T81213-NTB, DSM:7492, NCTC:12491
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 221,909 174,854 665
Protein 2,804,243 2,354,578 -
Structure 567 243 -
Genome 1 1 -
Popset 364 364 -
Conserved Domains 14 12 -
GEO Datasets 1,543 1,435 -
PubMed Central 37,777 37,777 -
Gene 89,492 218 -
SRA Experiments 2,170 1,708 -
GEO Profiles 4,608 4,608 -
Protein Clusters 2,911 2,911 -
Identical Protein Groups 1,428,623 1,359,698 -
Bio Project 1,050 547 -
Bio Sample 4,166 3,465 121
Bio Systems 8,273 154 -
Assembly 2,283 1,720 6
Probe 150 148 -
PubChem BioAssay 737 645 -
Taxonomy 484 1 -

Comments and References:

Bronsdon MA et al. (1991)
Bronsdon, M.A., Goodwin, C.S., Sly, L.I., Chilvers, T., and Schoenknecht, F.D. "Helicobacter nemestrinae sp. nov., a spiral bacterium found in the stomach of a pigtailed macaque (Macaca nemestrina)." Int. J. Syst. Bacteriol. (1991) 41:148-153.
Eckloff BW et al. (1994)
Eckloff, B.W., Podzorski, R.P., Kline, B.C., and Cockerill, F.R. 3rd. "A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori." Int. J. Syst. Bacteriol. (1994) 44:320-323.
Fox JG et al. (1988)
Fox, J.G., Taylor, N.S., Edmonds, P., and Brenner, D.J. "Campylobacter pylori subsp. mustelae subsp. nov. isolated from the gastric mucosa of ferrets (Mustela putorius furo), and an emended description of Campylobacter pylori." Int. J. Syst. Bacteriol. (1988) 38:367-370. [No PubMed record available.]
Fox JG et al. (1989)
Fox, J.G., Chilvers, T., Goodwin, C.S., Taylor, N.S., Edmonds, P., Sly, L.I., and Brenner, D.J. "Campylobacter mustelae, a new species resulting from the elevation of Campylobacter pylori subsp. mustelae to species status." Int. J. Syst. Bacteriol. (1989) 39:301-303. [No PubMed record available.]
Goodwin CS et al. (1989)
Goodwin, C.S., Armstrong, J.A., Chilvers, T., Peters, M., Collins, M.D., Sly, L., McConnell, W., and Harper, W.E.S. "Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., respectively." Int. J. Syst. Bacteriol. (1989) 39:397-405. [No PubMed record available.]
Marshall BJ & Goodwin CS (1987)
Marshall, B.J., and Goodwin, C.S. "Revised nomenclature of Campylobacter pyloridis." Int. J. Syst. Bacteriol. (1987) 37:68. [No PubMed record available.]
Marshall BJ et al. (1984)
Marshall, B.J., Royce, H., Annear, D.I., Goodwin, C.S., Pearman, J.W., Warren, J.R., and Armstrong, J.A. "Original isolation of Campylobacter pyloridis from human gastric mucosa." Microbios. Lett. (1984) 25:83-88. [No PubMed record available.]
Moore WEC et al. (1985) (reference with type strain information)
Moore, W.E.C., Cato, E.P., and Moore, L.V.H. "Index of the bacterial and yeast nomenclatural changes published in the International Journal of Systematic Bacteriology since the 1980 Approved Lists of bacterial names (1 January 1980 to 1 January 1985)." Int. J. Syst. Bacteriol. (1985) 35:382-407. [No PubMed record available.]
On SLW (2000) (Helicobacter nemestrinaei)
On, S.L.W. "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Campylobacter and related bacteria." Minutes of the meeting, 2 September 1998, Budapest, Hungary. Int. J. Syst. Evol. Microbiol. (2000) 50:1399-1400. [No PubMed record available.] (Note: Re-examination of the taxonomic status of Helicobacter nemestrinae Bronsdon et al. 1991 is recommended.)
Sly LI et al. (1993)
Sly, L.I., Bronsdon, M.A., Bowman, J.P., Holmes, A., and Stackebrandt, E. "The phylogenetic position of Helicobacter nemestrinae." Int. J. Syst. Bacteriol. (1993) 43:386-387.
Suerbaum S et al. (2002)
Suerbaum, S., Kraft, C., Dewhirst F.E., and Fox, J.G. "Helicobacter nemestrinae ATCC 49396(T) is a strain of Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989, and Helicobacter nemestrinae Brondson et al. 1991 is therefore a junior heterotypic synonym of Helicobacter pylori." Int. J. Syst. Evol. Microbiol. (2002) 52:437-439.
VALIDATION LIST No. 17 (1985) (Campylobacter pyloridis)
VALIDATION LIST No. 17. Int. J. Syst. Bacteriol. (1985) 35:223-225.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Helicobacter pylori meta-databases BacDive
39 records from this provider organism-specific BioCyc
Helicobacter pylori (Marshall et al. 1985) Goodwin et al., 1989 taxonomy/phylogenetic Encyclopedia of life
103 records from this provider organism-specific Genomes On Line Database
Helicobacter pylori culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
159 records from this provider organism-specific Integrated Microbial Genomes
Helicobacter pylori taxonomy/phylogenetic Lifemap
Helicobacter pylori taxonomy/phylogenetic TreeBase
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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