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Taxonomy browser (Helicobacter pylori)

Helicobacter pylori

Taxonomy ID: 210 (for references in articles please use NCBI:txid210)
Scientific name: Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989
type strain of Helicobacter pylori: ATCC:43504
type strain of Helicobacter pylori: CCUG:15815 B
type strain of Helicobacter pylori: CCUG:17874
type strain of Helicobacter pylori: CCUG:39500
type strain of Helicobacter pylori: CIP:103995
type strain of Helicobacter pylori: DSM:4867
type strain of Helicobacter pylori: JCM:12093
type strain of Helicobacter pylori: BCCM/LMG:18041
type strain of Helicobacter pylori: BCCM/LMG:19449
type strain of Helicobacter pylori: NCTC:11637
type strain of Helicobacter pylori: personal::Royal Perth Hospital 13487
type strain of Helicobacter pylori: DSM:21031
homotypic synonym: Campylobacter pylori subsp. pylori Marshall et al. 1985
homotypic synonym: Campylobacter pylori Marshall et al. 1985 corrig. Marshall and Goodwin 1987
homotypic synonym: Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1988
homotypic synonym: Campylobacter pylori corrig. Marshall et al. 1985 emend. Fox et al. 1989
Inherited blast name: e-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: Campylobacter pyloridis Marshall et al.1985
synonym: Helicobacter nemestrinae Bronsdon et al. 1991
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
   Entrez records   
Database name Subtree links Direct links
Nucleotide 189,066 143,084
Nucleotide GSS 27 25
Protein 2,361,903 1,919,694
Structure 520 216
Genome 1 1
Popset 343 343
Conserved Domains 11 9
GEO Datasets 1,522 1,414
PubMed Central 30,158 30,158
Gene 86,111 103
SRA Experiments 975 550
GEO Profiles 4,608 4,608
Protein Clusters 2,911 2,911
Identical Protein Groups 998,726 922,144
Bio Project 980 485
Bio Sample 2,303 1,633
Bio Systems 8,273 154
Assembly 1,478 924
Probe 150 148
PubChem BioAssay 704 631
Taxonomy 484 1

Comments and References:

Reference to PubMed documentBronsdon MA et al. (1991)
Bronsdon, M.A., Goodwin, C.S., Sly, L.I., Chilvers, T., and Schoenknecht, F.D. "Helicobacter nemestrinae sp. nov., a spiral bacterium found in the stomach of a pigtailed macaque (Macaca nemestrina)." Int. J. Syst. Bacteriol. (1991) 41:148-153.

Reference to PubMed documentEckloff BW et al. (1994)
Eckloff, B.W., Podzorski, R.P., Kline, B.C., and Cockerill, F.R. 3rd. "A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori." Int. J. Syst. Bacteriol. (1994) 44:320-323.

Nota BeneFox JG et al. (1988)
Fox, J.G., Taylor, N.S., Edmonds, P., and Brenner, D.J. "Campylobacter pylori subsp. mustelae subsp. nov. isolated from the gastric mucosa of ferrets (Mustela putorius furo), and an emended description of Campylobacter pylori." Int. J. Syst. Bacteriol. (1988) 38:367-370. [No PubMed record available.]

Nota BeneFox JG et al. (1989)
Fox, J.G., Chilvers, T., Goodwin, C.S., Taylor, N.S., Edmonds, P., Sly, L.I., and Brenner, D.J. "Campylobacter mustelae, a new species resulting from the elevation of Campylobacter pylori subsp. mustelae to species status." Int. J. Syst. Bacteriol. (1989) 39:301-303. [No PubMed record available.]

Nota BeneGoodwin CS et al. (1989)
Goodwin, C.S., Armstrong, J.A., Chilvers, T., Peters, M., Collins, M.D., Sly, L., McConnell, W., and Harper, W.E.S. "Transfer of Campylobacter pylori and Campylobacter mustelae to Helicobacter gen. nov. as Helicobacter pylori comb. nov. and Helicobacter mustelae comb. nov., respectively." Int. J. Syst. Bacteriol. (1989) 39:397-405. [No PubMed record available.]

Nota BeneMarshall BJ & Goodwin CS (1987)
Marshall, B.J., and Goodwin, C.S. "Revised nomenclature of Campylobacter pyloridis." Int. J. Syst. Bacteriol. (1987) 37:68. [No PubMed record available.]

Marshall BJ et al. (1984)
Marshall, B.J., Royce, H., Annear, D.I., Goodwin, C.S., Pearman, J.W., Warren, J.R., and Armstrong, J.A. "Original isolation of Campylobacter pyloridis from human gastric mucosa." Microbios. Lett. (1984) 25:83-88. [No PubMed record available.]

Nota BeneMoore WEC et al. (1985) (reference with type strain information)
Moore, W.E.C., Cato, E.P., and Moore, L.V.H. "Index of the bacterial and yeast nomenclatural changes published in the International Journal of Systematic Bacteriology since the 1980 Approved Lists of bacterial names (1 January 1980 to 1 January 1985)." Int. J. Syst. Bacteriol. (1985) 35:382-407. [No PubMed record available.]

Nota BeneOn SLW (2000) (Helicobacter nemestrinaei)
On, S.L.W. "International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Campylobacter and related bacteria." Minutes of the meeting, 2 September 1998, Budapest, Hungary. Int. J. Syst. Evol. Microbiol. (2000) 50:1399-1400. [No PubMed record available.] (Note: Re-examination of the taxonomic status of Helicobacter nemestrinae Bronsdon et al. 1991 is recommended.)

Reference to PubMed documentSly LI et al. (1993)
Sly, L.I., Bronsdon, M.A., Bowman, J.P., Holmes, A., and Stackebrandt, E. "The phylogenetic position of Helicobacter nemestrinae." Int. J. Syst. Bacteriol. (1993) 43:386-387.

Reference to PubMed documentSuerbaum S et al. (2002)
Suerbaum, S., Kraft, C., Dewhirst F.E., and Fox, J.G. "Helicobacter nemestrinae ATCC 49396(T) is a strain of Helicobacter pylori (Marshall et al. 1985) Goodwin et al. 1989, and Helicobacter nemestrinae Brondson et al. 1991 is therefore a junior heterotypic synonym of Helicobacter pylori." Int. J. Syst. Evol. Microbiol. (2002) 52:437-439.

Nota BeneVALIDATION LIST No. 17 (1985) (Campylobacter pyloridis)
VALIDATION LIST No. 17. Int. J. Syst. Bacteriol. (1985) 35:223-225.

Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
WUGSC - Washington University, Genome Sequencing Center
3,575 3,575
Totals per type
3,575 3,575

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Helicobacter pylori meta-databases BacDive
Helicobacter pylori (Marshall et al. 1985) Goodwin et al., 1989 taxonomy/phylogenetic Encyclopedia of life
103 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Helicobacter pylori culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
92 records from this provider organism-specific Integrated Microbial Genomes
Helicobacter pylori taxonomy/phylogenetic Lifemap
Helicobacter pylori (taxon passport) culture/stock collections StrainInfo
Helicobacter pylori taxonomy/phylogenetic TreeBase
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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