Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Planctomycetes)

Planctomycetes

Taxonomy ID: 203682 (for references in articles please use NCBI:txid203682)
Scientific name: Planctomycetes Garrity and Holt 2001 emend. Ward 2011
NCBI BLAST® name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Planctomycetaeota Oren et al. 2015
heterotypic synonym: Planctomycetota
Lineage( full )
cellular organisms; Bacteria; PVC group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 110,685 -
Protein 1,074,921 -
Structure 43 -
Genome 203 -
Popset 1,008 786
Conserved Domains 22 -
GEO Datasets 88 -
PubMed Central 3,683 2,795
Gene 36,322 -
SRA Experiments 376 7
Protein Clusters 15,032 -
Identical Protein Groups 1,255,754 -
Bio Project 142 -
Bio Sample 1,032 2
Bio Systems 2,397 -
Assembly 606 -
Probe 41 3
Taxonomy 1,080 1

Comments and References:

Reference to PubMed documentButler MK & Fuerst JA (2004)
Butler, M.K., and Fuerst, J.A. "Comparative analysis of ribonuclease P RNA of the planctomycetes." Int. J. Syst. Evol. Microbiol. (2004) 54:1333-1344. Published online 9 February 2004: DOI 10.1099/ijs.0.03013-0

Reference to PubMed documentOren A et al. (2015)
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65:4284-4287.

Reference to PubMed documentScheuner C et al. (2014)
Scheuner, C., Tindall, B.J., Lu, M., Nolan, M., Lapidus, A., Cheng, J.-F., Goodwin, L., Pitluck, S., Huntemann, M., Liolios, K., Pagani, I., Mavromatis, K., Ivanova, N., Pati, A., Chen, A., Palaniappan, K., Jeffries, C.D., Hauser, L., Land, M., Mwirichia, R., Rohde, M., Abt, B., Detter, J.C., Woyke, T., Eisen, J.A., Markowitz, V., Hugenholtz, P., Goker, M., Kyrpides, N.C., and Klenk, H.-P. "Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae." Stand. Genomic Sci. (2014) 9:10.

Reference to PubMed documentTeeling H et al. (2004)
Teeling, H., Lombardot, T., Bauer, M., Ludwig, W., and Glockner, F.O. "Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees." Int. J. Syst. Evol. Microbiol. (2004) 54:791-801. Published online 5 December 2003: DOI 10.1099/ijs.0.02913-0

Ward NL (2011)
Ward, N.L. "Phylum XXV. lanctomycetes Garrity and Holt 2001, 137 emend. Ward (this volume)." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 4 (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyglomi, Gemmatimonadetes, Lentisphaerae, Verrumicrobia, Chlamydiae, and Planctomycetes) (N.R. Krieg, J.T. Staley, D.R. Brown, B.P. Hedlund, B.J. Paster, N.L. Ward, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2011). p. 879. [No PubMed record available.]

Reference to PubMed documentWhitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68:967-969.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Planctomycetes taxonomy/phylogenetic Encyclopedia of life
25 records from this provider organism-specific Integrated Microbial Genomes
Planctomycetes taxonomy/phylogenetic Lifemap
Planctomycetes Fukunaga, Kurahashi, Sakiyama, Ohuchi, Yokota & Harayama, 2009 taxonomy/phylogenetic World Register of Marine Species
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]