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Taxonomy browser (Actinobacteria)

Actinobacteria 1),2)

Taxonomy ID: 201174 (for references in articles please use NCBI:txid201174)
current name
Actinobacteria 1),2)
NCBI BLAST name: actinobacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Actinobacteriota
heterotypic synonym
Actinobacteraeota Oren et al. 2015
blast name
actinobacteria
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 5,254,494 -
Protein 89,822,520 1,808
Structure 7,753 -
Genome 3,074 -
Popset 9,800 6,253
Conserved Domains 631 24
GEO Datasets 11,542 -
PubMed Central 188,990 18,258
Gene 2,608,186 -
SRA Experiments 109,492 2
GEO Profiles 50,901 -
Protein Clusters 163,177 19
Identical Protein Groups 36,813,695 1,808
Bio Project 13,616 -
Bio Sample 135,245 2
Bio Systems 94,880 -
Assembly 25,224 -
Probe 2,559 3
PubChem BioAssay 11,752 -
Taxonomy 78,987 1

Notes:

Comments and References:

Bacteriological Code and rank "Phylum"
The International Code of Nomenclature of Bacteria (1990 Revision) does not recognize any rank higher than Class (Rule 5b) and the names of phyla are not to be regarded as having been validly published even though they may have been published in a validation or notification list, or in the Approved List of Bacterial Names.
BMSB 2nd ed. Taxonomic Outline
Garrity, G.M., and Holt, J.G. "Taxonomic Outline of the Archaea and Bacteria." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). pp. 155-166. [No PubMed record available.]
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52:7-76.
Gao B & Gupta RS (2005)
Gao, B., and Gupta, R.S. "Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria." Int. J. Syst. Evol. Microbiol. (2005) 55:2401-2412.
Ludwig W et al. (2012b)
Ludwig, W., Euzeby, J., Schumann, P., Busse, H.-J., Trujillo, M.E., Kampfer, P., and Whitman, W.B. "Road map of the Phylum Actinobacteria." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 5 (The Actinobacteria, Part A) (M. Goodfellow, P. Kampfer, H.-J. Busse, M.E. Trujillo, K.-i. Suzuki, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2012). pp. 1-28. [No PubMed record available.] [N.B.: the authors raise all subclasses and suborders of the phylum Actinobacteria to the rank of class and order, respectively.]
Oren A et al. (2015)
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65:4284-4287.
Whitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68:967-969.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Actinobacteria taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
129 records from this provider organism-specific Integrated Microbial Genomes
Actinobacteria taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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