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Taxonomy browser (Actinomycetota)

Actinomycetota

Taxonomy ID: 201174 (for references in articles please use NCBI:txid201174)
current name
Actinomycetota corrig. Goodfellow 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Actinobacteria" Goodfellow 2012, effective name 1) in [Goodfellow M (2012)]
"Actinobacteriota" Panda et al. 2022, effective name 2) in [Panda A et al. (2022)]
Actinobacteraeota Oren et al. 2015
"Actinobacteriota" Whitman et al. 2018 in [Whitman WB et al. (2018)]
"Actinobacteria" (ex Margulis 1974) Cavalier-Smith 2020 in [Cavalier-Smith T and Chao EE (2020)]
equivalent:
Actinobacteria
NCBI BLAST name: actinobacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
blast name
actinobacteria
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 7,495,638 -
Protein 141,369,045 436
Structure 10,221 -
Genome 4,918 -
Popset 10,263 6,308
Conserved Domains 1,055 31
GEO Datasets 17,211 -
PubMed Central 342,608 42,861
Gene 3,942,942 -
SRA Experiments 289,317 398
GEO Profiles 50,901 -
Protein Clusters 163,177 19
Identical Protein Groups 91,474,219 435
BioProject 20,687 46
BioSample 401,160 461
Assembly 69,426 -
Genetic Testing Registry 1 -
PubChem BioAssay 17,793 -
Taxonomy 88,421 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Goodfellow M (2012)
Goodfellow, M. "Phylum XXVI. Actinobacteria phyl. nov." In: Goodfellow, M., Kämpfer, P., Busse, H.-J., Trujillo, M.E., Suzuki, K., Ludwig, W., and Whitman, W.B (eds.), Bergey's Manual of Systematic Bacteriology, second edition, vol. 5, Springer, New York, 2012, pp. 33-34.
Panda A et al. (2022), PubMed: abstract
Panda, A., Islam, S.T., and Sharma, G. "Harmonizing prokaryotic nomenclature: Fixing the fuss over phylum name flipping." mBio (2022) 13(3):e0097022.
Whitman WB et al. (2018), PubMed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
Cavalier-Smith T and Chao EE (2020), doi: 10.1007/s00709-019-01442-7, PubMed: abstract
Cavalier-Smith, T., and Chao, E.E. "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)." Protoplasma (2020) 257(3):621-753.
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Gao B & Gupta RS (2005)
Gao, B., and Gupta, R.S. "Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria." Int. J. Syst. Evol. Microbiol. (2005) 55:2401-2412.
Ludwig W et al. (2012b)
Ludwig, W., Euzeby, J., Schumann, P., Busse, H.-J., Trujillo, M.E., Kampfer, P., and Whitman, W.B. "Road map of the Phylum Actinobacteria." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 5 (The Actinobacteria, Part A) (M. Goodfellow, P. Kampfer, H.-J. Busse, M.E. Trujillo, K.-i. Suzuki, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2012). pp. 1-28. [No PubMed record available.] [N.B.: the authors raise all subclasses and suborders of the phylum Actinobacteria to the rank of class and order, respectively.]
Whitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Actinobacteria taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
1577 records from this provider organism-specific Integrated Microbial Genomes
Actinobacteria taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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