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| Entrez | PubMed | Nucleotide | Protein | Genome | Structure | PMC | Taxonomy | BioCollections |
| Entrez records | |||
| Database name | Direct links | Subtree links | Links from type |
| BioProject | 83 | 27,477 | - |
| BioSample | 967 | 709,440 | - |
| Conserved Domains | 31 | 1,055 | - |
| GEO DataSets | - | 19,847 | - |
| Gene | - | 6,215,514 | - |
| Identical Protein Groups | 703 | 173,574,182 | - |
| Nucleotide | - | 12,493,311 | 1,323,019 |
| PubChem BioAssay | - | 18,652 | - |
| PMC | 45,256 | 359,252 | - |
| Protein | 702 | 217,478,676 | - |
| SRA | 1,096 | 457,137 | - |
| Structure | - | 11,444 | - |
| Taxonomy | 100,447 | 100,447 | - |
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Panda A et al. (2022)
, Pubmed: abstract
Panda, A., Islam, S.T., and Sharma, G. "Harmonizing prokaryotic nomenclature: Fixing the fuss over phylum name flipping." mBio (2022) 13(3):e0097022.
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Oren A & Garrity GM (2021)
, Pubmed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
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Goodfellow M (2012)
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Whitman WB et al. (2018)
, Pubmed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
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Cavalier-Smith T and Chao EE (2020)
, doi: 10.1007/s00709-019-01442-7
, Pubmed: abstract
Cavalier-Smith, T., and Chao, E.E. "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)." Protoplasma (2020) 257(3):621-753.
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Cavalier-Smith T (2002) Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76. |
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Gao B & Gupta RS (2005) Gao, B., and Gupta, R.S. "Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria." Int. J. Syst. Evol. Microbiol. (2005) 55:2401-2412. |
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Ludwig W et al. (2012b)
Ludwig, W., Euzeby, J., Schumann, P., Busse, H.-J., Trujillo, M.E., Kampfer, P., and Whitman, W.B. "Road map of the Phylum Actinobacteria." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 5 (The Actinobacteria, Part A) (M. Goodfellow, P. Kampfer, H.-J. Busse, M.E. Trujillo, K.-i. Suzuki, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2012). pp. 1-28. [No PubMed record available.] [N.B.: the authors raise all subclasses and suborders of the phylum Actinobacteria to the rank of class and order, respectively.]
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Whitman WB et al. (2018) Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969. |
Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.
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