Taxonomy browser (Streptomyces microflavus)

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Taxonomy browser (Streptomyces microflavus)

Streptomyces microflavus

Taxonomy ID: 1919 (for references in articles please use NCBI:txid1919)

current name

Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Streptomyces microflavus: CGMCC :4.1428, ATCC :13231, ATCC :25474, CBS :124.18, CBS :884.69, BCRC :12084, DSM :40331, HAMBI:1019, IFO :13062, NBRC :13062, JCM :4496, BCCM/LMG :19327, NRRL :B-2156, NRRL :B-2888, NRRL-ISP:5331, RIA:1254, VKM:Ac:971, ISP:5331

basionym:

"Actinomyces microflavus" Krainsky 1914, effective name¹⁾

homotypic synonym:

"Micromonospora microflava" (Krainsky 1914) Duche 1934, effective name²⁾

Streptomyces microflavus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980) emend. Lanoot et al. 2005, emended name³⁾

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Oospora cretacea" Kruger 1905, effective name⁴⁾

heterotypic synonym

"Actinomyces willmorei" Erikson 1935, effective name⁵⁾

heterotypic synonym

"Streptomyces cretaceus" (Kruger 1905) Waksman 1950, effective name⁶⁾

homotypic synonym:

"Actinomyces cretaceus" (Kruger 1905) Krasil'nikov 1941, effective name⁷⁾

heterotypic synonym

Streptomyces fulvissimus (Jensen 1930) Waksman and Henrici 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Streptomyces fulvissimus: ATCC :27431, CBS :783.72, BCRC :12172, CCUG :11114, CIP:105783, DSM :40593, IFO :13482, NBRC :13482, JCM :4129, JCM :4754, KCTC :9779, BCCM/LMG :19310, NCIMB:10505, NCIMB:9609, NRRL :B-1453, NRRL-ISP:5593, RIA:1443, VKM:Ac:994, ISP:5593, NBRC :3717

basionym:

"Actinomyces fulvissimus" Jensen 1930, effective name⁸⁾

heterotypic synonym

Streptomyces griseus subsp. alpha (Ciferri 1927) Pridham 1970 (Approved Lists 1980), nom. approb.⁹⁾ in [Skerman VBD et al. (1980)]

type strain of Streptomyces griseus subsp. alpha: CGMCC :4.1843, DSM :40937, JCM :5078, MTCC:1540, CGMCC :4.2075, IFO :15421, NBRC :15421, NBRC :101256, CBS :219.25, BCCM/LMG :19953, NRRL :B-2249, personal::AS 4.1843

heterotypic synonym

Streptomyces griseus subsp. cretosus Pridham 1970 (Approved Lists 1980), nom. approb.¹⁰⁾ in [Skerman VBD et al. (1980)]

type strain of Streptomyces griseus subsp. cretosus: CGMCC :4.1844, NBRC :13457, DSM :40561, KCC:S-0742, personal::AS 4.1844, BCCM/LMG :19946, ATCC :27903, CBS :137.21, NRRL :B-2252, JCM :4742, KCTC :9079

heterotypic synonym

Streptomyces lipmanii (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

basionym:

"Actinomyces lipmanii" Waksman and Curtis 1916, effective name¹¹⁾

type strain of "Actinomyces lipmanii": NRRL :B-2100, ATCC :3331, BCCM/LMG :20047, DSM :40070, NRRL :B-1229, JCM :4058, NBRC :12791, NBRC :3410, NBRC :3721

heterotypic synonym

Streptomyces willmorei (Erikson 1935) Waksman and Henrici 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Streptomyces willmorei: NRRL :B-1332, DSM :40459, ATCC :6867, BCCM/LMG :21046, JCM:4861, NBRC:13391, IMET:41387, IFO:13391, CGMCC:4.1934, CBS:692.72, BCRC:12640

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces griseus group; Streptomyces microflavus subgroup

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	2,500	2,496	119
Protein	148,828	141,858	-
Genome	1	1	-
Popset	71	71	-
GEO Datasets	2	2	-
PubMed Central	163	163	-
Gene	14,522	7,493	-
SRA Experiments	48	48	-
Protein Clusters	5	5	-
Identical Protein Groups	70,730	69,347	-
BioProject	14	12	-
BioSample	32	31	10
Assembly	14	13	2
Taxonomy	2	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
9) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
10) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
11) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Ciferri R (1927)

Ciferri, R. "Studien uber Kakao. Untersuchungen uber den muffigen Geruch der Kakaobohnen." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. II (1927) 71:80-93. [No PubMed record available.]

Erikson D (1935)

Erikson, D. "The pathogenic aerobic organisms of the actinomyces group." Medical Research Council (Great Britain) Special Report series (1935) 203:5-61. [No PubMed record available.]

Lanoot B et al. (2005)

Lanoot, B., Vancanneyt, M., Van Schoor, A., Liu, Z., and Swings, J. "Reclassification of Streptomyces nigrifaciens as a later synonym of Streptomyces flavovirens; Streptomyces citreofluorescens, Streptomyces chrysomallus subsp. chrysomallus and Streptomyces fluorescens as later synonyms of Streptomyces anulatus; Streptomyces chibaensis as a later synonym of Streptomyces corchorusii; Streptomyces flaviscleroticus as a later synonym of Streptomyces minutiscleroticus; and Streptomyces lipmanii, Streptomyces griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces willmorei as later synonyms of Streptomyces microflavus." Int. J. Syst. Evol. Microbiol. (2005) 55:729-731. Published online 18 October 2004. doi:10.1099/ijs.0.63391-0

Pridham TG (1970)

Pridham, T.G. "New names and new combinations in the order Actinomycetales Buchanan 1917." U.S. Dept. Agric. Tech. Bull. (1970) 1424:1-55. [No PubMed record available.]

Komaki H & Tamura T (2020), doi:10.1099/ijsem.0.004382

Komaki, H., and Tamura, T. "Reclassification of Streptomyces fulvissimus as a later heterotypic synonym of Streptomyces microflavus." Int. J. Syst. Evol. Microbiol. (2020) 70(9):5156-5162.

Rong X & Huang Y (2010)

Rong, X., and Huang, Y. "Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species." Int. J. Syst. Evol. Microbiol. (2010) 60:696-703. [N.B.: the authors incorrectly state that Streptomyces californicus is a later heterotypic synonym of Streptomyces puniceus. In fact, the reverse is true.]

Shirling EB & Gottlieb D (1968)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type cultures of Streptomyces. II. Species descriptions from first study." Int. J. Syst. Bacteriol. (1968) 18(2):69-189. [No PubMed record available.]

Shirling EB & Gottlieb D (1969)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies." Int. J. Syst. Bacteriol. (1969) 19:391-512. [No PubMed record available.]

Shirling EB & Gottlieb D (1972)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type strains of Streptomyces. V. Additional descriptions." Int. J. Syst. Bacteriol. (1972) 22(4):265-394. [No PubMed record available.]

Waksman SA & Curtis R (1916)

Waksman, S.A., and Curtis, R. "The Actinomyces of the soil." Soil Sci. (1916) 1:99-134. [No PubMed record available.]

Waksman SA & Henrici AT (1948b)

Waksman, S.A., and Henrici, A.T. "Family III. Streptomycetaceae Waksman and Henrici." IN: Breed, Murray, and Hitchens (Eds.), Bergey's Manual of Determinative Bacteriology, 6th Ed. (1948). The Williams and Wilkins Co., Balitmore. pp. 929-980. [No PubMed record available.]

Young JM et al. (1996) (reference with type strain information)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Streptomyces microflavus	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Streptomyces griseus subsp. alpha (Ciferri 1927) Pridham 1970 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: Go0120498	organism-specific	Genomes On Line Database
Streptomyces microflavus	culture/stock collections	Global Catalogue of Microorganisms
2 records from this provider	taxonomy/phylogenetic	Index Fungorum
3 records from this provider	organism-specific	Integrated Microbial Genomes
Oospora cretacea	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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