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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 4 4 -
BioSample 9 9 -
Identical Protein Groups 9,534 9,534 -
Nucleotide 138 138 15
PMC 6 6 -
Protein 20,066 20,066 -
SRA 3 3 -
Taxonomy 1 1 -

Clavibacter capsici

Taxonomy ID: 1874630 (for references in articles please use ncbitaxon:1874630)
current name
Clavibacter capsici  (Oh et al. 2016) Li et al. 2018 in [Li X et al. (2018)]
basionym:
Clavibacter michiganensis subsp. capsici  Oh et al. 2016
type strain of Clavibacter michiganensis subsp. capsici: personal : PF008 , KACC : 18448 , BCCM/LMG : 29047
homotypic synonym:
Clavibacter capsici  (Oh et al. 2016) Nouioui et al. 2018 , nom. illeg.  1) in  in  [Nouioui I et al. (2018c)] , [Validation List No. 184 (2018)]
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter

Notes:

Comments and References:
Li X et al. (2018) , doi: 10.1099/ijsem.0.002492 , Pubmed: abstract
Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68(1):234-240.
Nouioui I et al. (2018c) , doi: 10.3389/fmicb.2018.02007 , Pubmed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Validation List No. 184 (2018) , Pubmed: abstract
Validation List No. 184: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(11):3379-3393.
Oh EJ et al. (2016)
Oh, E.-J., Bae, C., Lee, H.-B., Hwang, I.S., Lee, H.-I., Yea, M.C., Yim, K.-O., Lee, S., Heu, S., Cha, J.-S., and Oh, C.-S. "Clavibacter michiganensis subsp. capsici subsp. nov., causing bacterial canker disease in pepper." Int. J. Syst. Evol. Microbiol. (2016) 66:4065-4070.
Oren A & Garrity GM (2018)
Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981. [N.B.: List Editors state that the names Clavibacter capsici, Clavibacter insidiosus, Clavibacter nebrasksensis, Clavibacter sepedonicus and Clavibacter tesselarius proposed by Li et al. are illegitimate as they contravene Rule 34a and 50a of the International Code of Nomenclature of Prokaryotes. The use of illegitimate names contravenes Rule 51a. Counterargument is presented by Tindall (2019).]
Tindall BJ (2019b)
Tindall, B.J. "The role of incorrect citation of the International Code of Nomenclature of Prokaryotes and subsequent misinterpretation in causing unnecessary nomenclatural confusion." Int. J. Syst. Evol. Microbiol. (2019) 69(8):2621-2625.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clavibacter capsici type strain (BD-ID 133135) meta-databases BacDive
GOLD: 4 Organisms organism-specific Genomes On Line Database
2654588053: Clavibacter michiganensis capsici PF008 organism-specific Integrated Microbial Genomes
8121129675: Clavibacter michiganensis capsici 1106 organism-specific Integrated Microbial Genomes
Clavibacter capsici | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Clavibacter capsici type strain (SI-ID 415236) meta-databases StrainInfo, Leibniz Institute DSMZ
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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