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Taxonomy browser (Pectobacterium brasiliense)

Pectobacterium brasiliense

Taxonomy ID: 180957 (for references in articles please use NCBI:txid180957)
current name
Pectobacterium brasiliense Portier et al. 2019
type strain of Pectobacterium brasiliense: personal::212, IBSBF:1692, CFBP:6617, BCCM/LMG:21371, NCPPB:4609
homotypic synonym:
"Erwinia carotovora subsp. brasiliensis" Duarte et al. 2004, effective name 1)
"Pectobacterium carotovorum subsp. brasiliensis" El Tassa and Duarte 2006, effective name 1)
"Pectobacterium brasiliensis" Ma et al. 2007, effective name 1)
"Pectobacterium carotovorum subsp. brasiliense" Nabhan et al. 2012, effective name 1)
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 10,005 8,553 254
Protein 263,017 258,418 -
Structure 4 2 -
Genome 1 1 -
Popset 100 100 -
GEO Datasets 14 - -
PubMed Central 39 39 -
Gene 8,754 8,754 -
SRA Experiments 92 80 -
Identical Protein Groups 108,005 107,474 -
Bio Project 38 35 -
Bio Sample 126 112 2
Assembly 101 99 2
Taxonomy 3 1 -

Notes:

Comments and References:

Duarte V et al. (2004)
Duarte, V., de Boer, S.H., Ward, L.J., and de Oliveira, A.M. "Characterization of atypical Erwinia carotovora strains causing blackleg of potato in Brazil." J. Appl. Microbiol. (2004) 96:535-545.
El Tassa SOM & Duarte V (2006)
El Tassa, S.O.M., and Duarte, V. "Identificacao de Pectobacterium carotovorum subsp. brasiliensis atraves de PCR-RFLP do gene recA." Fitopahtol. Bras. (2006) 31:23-28. [No PubMed record available.]
Ma B et al. (2007)
Ma, B., Hibbing, M.E., Kim, H.-S., Reedy, R.M., Yedidia, I., Breuer, Ja., Breuer, Je., Glasner, J.D., Perna, N.T., Kelman, A., and Charkowski, A.O. "Host range and molecular phylogenies of the soft rot enberobacterial genera Pectobacterium and Dickeya." Phytopathology (2007) 97:1150-1163.
Nabhan S et al. (2012)
Nabhan, S., De Boer, S., Maiss, E., and Wydra, K. "Taxonomic relatedness among Pectobacterium carotovorum subsp. carotovorum, Pectobacterium carotovorum subsp. odoriferum and Pectobacterium carotovorum subsp. brasiliense subsp. nov." J. Appl. Microbiol. (2012) 113:904-913.
Portier P et al. (2019)
Portier, P., Pédron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Hélias, V., and Barny, M.A. "Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants." Int. J. Syst. Evol. Microbiol. (2019) 69(10):3207-3216.
Zhang Y et al. (2016d)
Zhang, Y., Fan, Q., and Loria, R. "A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data." Syst. Appl. Microbiol. (2016) 39:252-259. [N.B.: authors suggest elevation of Pectobacterium carotovorum subspp. to species rank.]

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18 records from this provider organism-specific Genomes On Line Database
24 records from provider organism-specific Integrated Microbial Genomes
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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