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Taxonomy browser (Mycobacterium)

Mycobacterium

Taxonomy ID: 1763 (for references in articles please use NCBI:txid1763)
Scientific name: Mycobacterium Lehmann and Neumann 1896 emend. Gupta et al. 2018
Inherited blast name: high GC Gram+
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,724,272 85
Nucleotide EST 31 -
Nucleotide GSS 27 -
Protein 22,568,576 123,741
Structure 2,494 -
Genome 84 1
Popset 1,102 663
Conserved Domains 60 48
GEO Datasets 5,489 4
PubMed Central 65,052 65,042
Gene 286,320 -
SRA Experiments 67,441 48
GEO Profiles 22,220 -
Protein Clusters 20,620 12,627
Identical Protein Groups 2,352,921 123,741
Bio Project 3,611 23
Bio Sample 70,321 57
Bio Systems 20,449 -
Assembly 6,773 -
Probe 796 11
PubChem BioAssay 8,145 25
Taxonomy 5,830 1

Comments and References:

Nota BeneMycobacterium (LPSN link)

Reference to PubMed documentGupta RS et al. (2018)
Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67.

Reference to PubMed documentKim H et al. (2005)
Kim, H., Kim, S.-H., Shim, T.-S., Kim, M., Bai, G.-H., Park, Y.-G., Lee, S.-H., Chae, G.-T., Cha, C.-Y., Kook, Y.-H., and Kim, B.-J. "Differentiation of Mycobacterium species by analysis of the heat-shock protein 65 gene (hsp65)." Int. J. Syst. Evol. Microbiol. (2005) 55:1649-1656. Published online 27 May 2005. DOI 10.1099/ijs.0.63553-0

Reference to PubMed documentLevy-Frebault VV & Portaels F (1992)
Levy-Frebault, V.V., and Portaels, F. "Proposed minimal standards for the genus Mycobacterium and for description of new slowly growing Mycobacterium species." Int. J. Syst. Bacteriol. (1992) 42:315-323.

Reference to PubMed documentLuquin M et al. (1991)
Luquin, M., Laneelle, M.A., Ausina, V., Garcia Barcelo, M., Belda, F., Alonso, C., and Prats, G. "Distribution of a novel mycolic acid in species of the genus Mycobacterium." Int. J. Syst. Bacteriol. (1991) 41:390-394.

Reference to PubMed documentOchi K (1995d)
Ochi, K. "Phylogenetic analysis of mycolic acid-containing wall-chemotype IV actinomycetes and allied taxa by partial sequencing of ribosomal protein AT-L30." Int. J. Syst. Bacteriol. (1995) 45:653-660.

Reference to PubMed documentPitulle C et al. (1992)
Pitulle, C., Dorsch, M., Kazda, J., Wolters, J., and Stackebrandt, E. "Phylogeny of rapidly growing members of the genus Mycobacterium." Int. J. Syst. Bacteriol. (1992) 42:337-343.

Reference to PubMed documentRogall T et al. (1990)
Rogall, T., Wolters, J., Flohr, T., Bottger, E.C. "Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium." Int. J. Syst. Bacteriol. (1990) 40:323-330.

Reference to PubMed documentShivannavar CT et al. (1996)
Shivannavar, C.T., Katoch, V.M., Sharma, V.D., Patil, M.A., Katoch, K., Bharadwaj, V.P., Sharma, R.K., Bhatia, A.S., and Agrawal, B.M. "Determination of mycobacterial phylogeny on the basis of immunological relatedness of superoxide dismutases." Int. J. Syst. Bacteriol. (1996) 46:1164-1169.

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Reference to PubMed documentStone BB et al. (1995)
Stone, B.B., Nietupski, R.M., Breton, G.L., and Weisburg, W.G. "Comparison of Mycobacterium 23S rRNA sequences by high-temperature reverse transcription and PCR." Int. J. Syst. Bacteriol. (1995) 45:811-819.

Reference to PubMed documentTakewaki S et al. (1994)
Takewaki, S., Okuzumi, K., Manabe, I., Tanimura, M., Miyamura, K., Nakahara, K., Yazaki, Y., Ohkubo, A., and Nagai, R. "Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species." Int. J. Syst. Bacteriol. (1994) 44:159-166.

Nota BeneWayne LG et al. (1991)
Wayne, L.G., Good, R.C., Krichevsky, M.I., Blacklock, Z., David, H.L., Dawson, D., Gross, W., Hawkins, J., Levy-Frebault, V.V., McManus, C., et al. "Fourth report of the cooperative, open-ended study of slowly growing mycobacteria by the International Working Group on Mycobacterial Taxonomy." Int. J. Syst. Bacteriol. (1991) 41:463-472.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mycobacterium taxonomy/phylogenetic Encyclopedia of life
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
3 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium Aronson taxonomy/phylogenetic Integrated Taxonomic Information System
Mycobacterium taxonomy/phylogenetic Lifemap
RIDOM Mycobacteria project taxonomy/phylogenetic NCBI taxonomy bookmarks
Mycobacterium sp. (taxon passport) culture/stock collections StrainInfo
Mycobacterium Aronson taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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