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Database name Direct links Subtree links Links from type
BioProject 22 22 -
BioSample 224 224 -
GEO DataSets 145 145 -
Gene 11,128 11,130 -
Identical Protein Groups 6,671 6,671 -
Nucleotide 1,060 1,060 972
PubChem BioAssay 1 1 -
Protein 13,129 13,129 -
SRA 199 199 -
Structure 254 254 -
Taxonomy 1 1 -

Agrobacterium fabrum str. C58

Taxonomy ID: 176299 (for references in articles please use ncbitaxon:176299)
current name
Agrobacterium fabrum str. C58
includes:
Agrobacterium tumefaciens str. C58 (Dupont)
Rhizobium radiobacter str. C58 (Dupont)
Rhizobium radiobacter str. C58 (U. Washington)
Agrobacterium tumefaciens str. C58 (U. Washington)
Rhizobium radiobacter str. C58 (Cereon)
Agrobacterium tumefaciens str. C58 (Cereon)
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Agrobacterium tumefaciens (strain C58)
Agrobacterium tumefaciens str. C58
NCBI BLAST name: a-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium fabrum

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Goodner B et al. (2001)
Goodner, B., Hinkle, G., Gattung, S., Miller, N., Blanchard, M., Qurollo, B., Goldman, B.S., Cao, Y., Askenazi, M., Halling, C., Mullin, L., Houmiel, K., Gordon, J., Vaudin, M., Iartchouk, O., Epp, A., Liu, F., Wollam, C., Allinger, M., Doughty, D., Scott, C., Lappas, C., Markelz, B., Flanagan, C., Crowell, C., Gurson, J., Lomo, C., Sear, C., Strub, G., Cielo, C., and Slater, S. "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58." Science (2001) 294:2323-2328.
Slater S et al. (2013)
Slater, S., Setubal, J.C., Goodner, B., Houmiel, K., Sun, J., Kaul, R., Goldman, B.S., Farrand, S.K., Almeida, N. Jr., Burr, T., Nester, E., Rhoads, D.M., Kadoi, R., Ostheimer, T., Pride, N., Sabo, A., Henry, E., Telepak, E., Cromes, L., Harkleroad, A., Oliphant, L., Pratt-Szegila, P., Welch, R., and Wood, D. "Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium." Appl. Environ. Microbiol. (2013) 79:1414-1417.
Wood DW et al. (2001)
Wood, D.W., Setubal, J.C., Kaul, R., Monks, D., Chen, L., Wood, G.E., Chen, Y., Woo, L., Kitajima, J.P., Okura, V.K., Almeida Jr., N.F., Zhou, Y., Bovee Sr., D., Chapman, P., Clendenning, J., Deatherage, G., Gillet, W., Grant, C., Guenthner, D., Kutyavin, T., Levy, R., Li, M., McClelland, E., Palmieri, A., Raymond, C., Rouse, G., Saenphimmachak, C., Wu, Z., Gordon, D., Eisen, J.A., Paulsen, I., Karp, P., Romero, P., Zhang, S., Yoo, H., Tao, Y., Biddle, P., Jung, M., Krespan, W., Perry, M., Gordon-Kamm, B., Liao, L., Kim, S., Hendrick, C., Zhao, Z., Dolan, M., Tingey, S.V., Tomb, J., Gordon, M.P., Olson, M.V., and Nester, E.W. "The genome of the natural genetic engineer Agrobacterium tumefaciens C58." Science (2001) 294:2317-2323.


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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