Taxonomy browser (Corynebacterium glutamicum)

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Taxonomy browser (Corynebacterium glutamicum)

Corynebacterium glutamicum

Taxonomy ID: 1718 (for references in articles please use NCBI:txid1718)

current name

Corynebacterium glutamicum (Kinoshita et al. 1958) Abe et al. 1967

type strain of Corynebacterium glutamicum: ATCC :13032, CCUG :27702, CIP:82.8, DSM :20300, HAMBI:2052, IFO :12168, JCM :1318, BCCM/LMG :3730, NBRC :12168, NRRL :B-2784

homotypic synonym:

"Micrococcus glutamicus" Kinoshita et al. 1958, effective name¹⁾

Corynebacterium glutamicum (Kinoshita et al. 1958) Abe et al. 1967 emend. Nouioui et al. 2018, emended name²⁾ in [Nouioui I et al. (2018c)]

includes:

Arthrobacter sp. NCIB 9666

Brevibacterium sp. ATCC 19165

Microbacterium sp. ATCC 15283

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Brevibacterium chang-fua

heterotypic synonym

Brevibacterium glutamigenes

heterotypic synonym

Brevibacterium lactofermentum

heterotypic synonym

Brevibacterium saccharolyticum

heterotypic synonym

Brevibacterium seonmiso

heterotypic synonym

Brevibacterium taipei

heterotypic synonym

Brevibacterium thiogenitalis

heterotypic synonym

Corynebacterium lactofermentum

heterotypic synonym

Micrococcus maripuniceus

heterotypic synonym

Brevibacterium divaricatum Su and Yamada 1960 (Approved Lists 1980), nom. approb.³⁾

type strain of Brevibacterium divaricatum: ATCC :14020, JCM :1307

heterotypic synonym

Corynebacterium lilium Lee and Good 1963 (Approved Lists 1980), nom. approb.⁴⁾

type strain of Corynebacterium lilium: ATCC :15990, DSM :20137, JCM :1321, BCCM/LMG :3654

heterotypic synonym

Corynebacterium crenatum

homotypic synonym:

"Corynebacterium crenatum" Chen and Li 1975, effective name⁵⁾ in [Chen Q & Li LG (1975)]

type strain of "Corynebacterium crenatum": personal::AS 1.542, CICC:20662

Lineage( full ): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	36,060	34,564	144
Protein	211,198	167,063	-
Structure	255	125	-
Conserved Domains	3	3	-
GEO Datasets	1,764	1,505	-
PubMed Central	5,997	5,997	-
Gene	34,212	6,294	-
SRA Experiments	1,086	778	-
Protein Clusters	2,200	2,200	-
Identical Protein Groups	51,933	49,118	-
BioProject	352	207	-
BioSample	1,166	780	386
Datasets Genome	91	74	-
PubChem BioAssay	35	35	-
Taxonomy	14	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
3) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
4) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Chen Q & Li LG (1975)

Chen, Q., and Li, L.-G. "Studies on L-glutamic acid producing bacteria AS 1.542. I. Identification of strain AS 1.542." Acta Microbiologica Sinica (Wei Sheng Wu Xue Bao) (1975) 15(2):119-124 (in Chinese with English abstract).

'Corynebacterium lactofermentum' = Corynebacterium glutamicum

Amador et al. (1999) propose the transfer of "Brevibacterium lactofermentum" to "Corynebacterium lactofermentum" on the basis of studies involving "B. lactofermentum" strains ATCC 13869 and DSM 20412. However, the ATCC catalogue of strains lists ATCC 13869 as C. glutamicum. Moreover, Liebl et al. (1991) have previously transferred "B. lactofermentum" strains DSM 20412 and DSM 1412 to C. glutamicum.

Corynebacterium crenatum

'Corynebacterium crenatum' is described as a subspecies of Corynebacterium glutamicum.

Abe S et al. (1967)

Abe, S., Takayama, K., and Kinoshita, S. "Taxonomical studies on glutamic acid-producing bacteria." J. Gen. Appl. Microbiol. (1967) 13:279-301. [No PubMed record available.]

Amador E et al. (1999)

Amador, E., Castro, J.M., Correia, A., and Martin, J.F. "Structure and organization of the rrnD operon of 'Brevibacterium lactofermentum': analysis of the 16S rRNA gene." Microbiology (1999) 145:915-924.

Fukuda H (1971) (Brevibacterium thiogenitalis)

Fukuda H. "Method for producing L-glutamic acid." U.S. Pat. 3,623,951 dated Nov. 30, 1971.

Liebl W et al. (1991)

Liebl, W., Ehrmann, M., Ludwig, W., Schleifer, K.H. "Transfer of Brevibacterium divaricatum DSM 20297T, "Brevibacterium flavum" DSM 20411, "Brevibacterium lactofermentum" DSM 20412 and DSM 1412, and Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns." Int. J. Syst. Bacteriol. (1991) 41:255-260.

Okumura S et al. (1962) (Brevibacterium saccharolyticum)

Okumura, S. et al. "Studies on the L-glutamic acid fermentation. Part I. The new bacteria of the genus Brevibacterium isolated from the nature to produce L-glutamic acid." J. Agric. Chem. Soc. Jpn. (1962) 36:141-159. [No PubMed record available.]

Oberreuter H et al. (2002b)

Oberreuter, H., Charzinski, J., and Scherer, S. "Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy." Microbiology (2002) 148:1523-1532.

Skerman VBD et al. (1980) (Corynebacterium glutamicum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Su Y & Yamada K (1960)

Su, Y., and Yamada, K.: Bull. Agric. Chem. Soc. Japan (1960) 24:69-74. [No PubMed record available.]

Zobell CE & Upham HC (1944) (Micrococcus maripuniceus)

Zobell, C.E., and Upham, H.C. "A list of marine bacteria including descriptions of sixty new species." Bull. Scripps Inst. Oceanogr. (1944) 5: 239-292. [No PubMed record available.]

Brevibacterium flavum & lactofermentum

"The Prokaryotes" (2nd edition) p. 1158 discusses the nomenclatural status of Brevibacterium flavum and Brevibacterium lactofermentum: "Their systematic classification has not been clarified but numerous data exist [citations listed below] indicating their close relatedness, if not identity, with Corynebacterium glutamicum: C. lilium, Brevibacterium flavum, B. lactofermentum, and B. divaricatum. Of the nomenclatural species B. flavum, B. lactofermentum, B. divaricatum, only B. divaricatum is included in the Approved Lists of Bacterial Names (Skerman et al., 1980), and none is a true member of the genus Brevibacterium. Therefore, data obtained with these species will be included with the discussion of the properties of Corynebacterium glutamicum." Abe et al. (1967) J. Gen. Appl. Microbiol. 13:279-301. Suzuki et al. (1981) Int. J. Syst. Bacteriol. 31:131-138. Minnikin et al. (1978) in "Coryneform bacteria" Academic Press, London.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Corynebacterium glutamicum	meta-databases	BacDive - Free access to bacterial information database
22 records from this provider	organism-specific	BioCyc
Brevibacterium divaricatum Su and Yamada 1960 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 53 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Corynebacterium glutamicum	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
19 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Corynebacterium glutamicum \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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