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Taxonomy browser (Treponema phagedenis)

Treponema phagedenis

Taxonomy ID: 162 (for references in articles please use NCBI:txid162)
current name
Treponema phagedenis (Noguchi 1912) Brumpt 1922, nom. rev. 1)
type strain of Treponema phagedenis: personal::B43.1, DSM:110455, NCTC:14362
homotypic synonym:
"Spirochaeta phagedenis" Noguchi 1912, effective name 2)
NCBI BLAST name: spirochetes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,297 536 4
Protein 48,183 45,029 -
PubMed Central 231 231 -
Gene 6,017 3,170 -
SRA Experiments 19 17 -
Protein Clusters 1,325 1,325 -
Identical Protein Groups 14,394 13,312 -
BioProject 12 10 -
BioSample 47 45 1
Datasets Genome 17 15 -
Taxonomy 4 1 -

Notes:

Comments and References:

Brumpt E (1922)
Brumpt, E. "Les spirochetoses." In: Roger, Widal, and Teisser (eds.) Nouveau Traite de Medicin. Fasc. IV. Masson, Paris. pp. 491-531. [No PubMed record available.]
Noguchi H (1912)
Noguchi, H. "Pure cultivation of Spirochæta phagedenis (new species), a spiral organism found in phagedenic lesions on human external genitalia." J. Exp. Med. (1912) 16(3):261-268.
Kuhnert P et al. (in press_2020)
Kuhnert, P., Brodard, I., Alsaaod, M., Steiner, A., Stoffel, M.H., and Jores, J. "Treponema phagedenis (ex Noguchi 1912) Brumpt 1922 sp. nov., nom. rev., isolated from bovine digital dermatitis." Int. J. Syst. Evol. Microbiol. (in press)
Smibert RM (1984)
Smibert, R.M. "Genus III Treponema Schaudinn 1905, 1728AL" In: (ed.) N.R. Krieg and J.G. Holt. Bergey's Manual of Systematic Bacteriology, vol. 1 (1984) Williams and Wilkins, Baltimore. pp. 49-57. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: 9 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2 records from this provider organism-specific Integrated Microbial Genomes
Treponema phagedenis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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