Taxonomy browser (Lactiplantibacillus plantarum)

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Taxonomy browser (Lactiplantibacillus plantarum)

Lactiplantibacillus plantarum

Taxonomy ID: 1590 (for references in articles please use NCBI:txid1590)

current name

Lactiplantibacillus plantarum (Orla-Jensen 1919) Zheng et al. 2020 in [Zheng J et al. (2020)]

homotypic synonym:

"Lactobacterium plantarum" (Orla-Jensen 1919) Krasil'nikov 1949, effective name¹⁾

Lactobacillus plantarum (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), nom. approb.²⁾ in [Skerman VBD et al. (1980)]

type strain of Lactobacillus plantarum: ATCC :14917, CCUG :30503, CIP:103151, DSM :20174, IFO :15891, JCM :1149, BCCM/LMG :6907, NBRC :15891, NCIMB:11974, NRRL :B-4496, CGMCC :1.2437, NCTC :13644, CECT:748, BCCM/LMG :6907

basionym:

"Streptobacterium plantarum" Orla-Jensen 1919, effective name¹⁾

homotypic synonym:

"Lactobacillus plantari" (sic) (Orla-Jensen 1919) Bergey et al. 1923 (Approved Lists 1980), effective name, orth. var.^1),3)

includes:

Lactobacillus sp. DMR09

Lactobacillus sp. Lact08

Lactobacillus sp. Lact09

Lactobacillus sp. Lact14

Lactobacillus sp. M6DWS

Lactobacillus sp. S2

Lactobacillus sp. S8

Lactobacillus sp. Z12

Weissella sp. Lact07

NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Lactobacillus arabinosus" Fred et al., effective name¹⁾

heterotypic synonym

Lactobacillus arizonensis Swezey et al. 2000

type strain of Lactobacillus arizonensis: NRRL :B-14768, ATCC :BAA-171, CCUG :45396, CIP:106786, DSM :13273, JCM :11125

includes:

Lactobacillus sp. XJ25

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactiplantibacillus

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	139,673	134,778	399
Protein	1,609,842	1,491,883	-
Structure	128	77	-
Genome	1	1	-
Popset	571	570	-
GEO Datasets	665	531	-
PubMed Central	1,191	1,135	-
Gene	26,574	7,208	-
SRA Experiments	1,130	1,021	-
Protein Clusters	3,057	3,057	-
Identical Protein Groups	280,197	272,224	-
BioProject	712	628	-
BioSample	2,212	2,093	38
Assembly	1,002	939	6
PubChem BioAssay	17	17	-
Taxonomy	26	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).
2) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
3) 'Orth. var.' (= orthographic variant) refers to a name not following standard rules of orthography, such as gender disagreement between genus and species, either when originally published or mistakenly corrected in later publications; includes names which are "incorrect original spellings" and "incorrect subsequent spellings" in zoological parlance.

Comments and References:

Zheng J et al. (2020), PubMed: abstract

Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Bringel F et al. (1996)

Bringel, F., Curk, M.C., and Hubert, J.C. "Characterization of lactobacilli by Southern-type hybridization with a Lactobacillus plantarum pyrDFE probe." Int. J. Syst. Bacteriol. (1996) 46:588-594.

Bergey DH et al. (1923)

Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]

Falsen E et al. (1999) (reference with type strain information)

Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.

Orla-Jensen S (1919)

Orla-Jensen, S.: The lactic acid bacteria. Host & Son, Copenhagen (1919). pp. 1-118. [No PubMed record available.]

Krasil'nikov NA (1949)

Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Swezey JL et al. (2000)

Swezey, J.L., Nakamura, L.K., Abbott, T.P., and Peterson, R.E. "Lactobacillus arizonensis sp. nov., isolated from jojoba meal." Int. J. Syst. Evol. Microbiol. (2000) 50(5):1803-1809.

Kostinek M et al. (2005)

Kostinek, M., Pukall, R., Rooney, A.P., Schillinger, U., Hertel, C., Holzapfel, W.H., and Franz, C.M.A.P. "Lactobacillus arizonensis is a later heterotypic synonym of Lactobacillus plantarum." Int. J. Syst. Evol. Microbiol. (2005) 55(6):2485-2489. Published online 29 July 2005. doi:10.1099/ijs.0.63880-0

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Lactiplantibacillus plantarum	meta-databases	BacDive
33 records from this provider	organism-specific	BioCyc
103 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Lactobacillus plantarum	culture/stock collections	Global Catalogue of Microorganisms
296 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Wikipedia	taxonomy/phylogenetic	iPhylo

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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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