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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 127 1,324 -
BioSample 2,595 19,099 -
Conserved Domains 12 13 -
GEO DataSets 45 562 -
Gene - 150,901 -
Identical Protein Groups 46,200 1,207,112 -
Nucleotide 48 604,276 17,420
PubChem BioAssay 13 97 -
PMC 78,618 78,630 -
Protein 46,206 2,304,393 -
SRA 2,845 7,122 -
Structure 4 132 -
Taxonomy 2,325 2,325 -

Lactobacillus

Taxonomy ID: 1578 (for references in articles please use NCBI:txid1578)
current name
Lactobacillus  Beijerinck 1901 (Approved Lists 1980)
homotypic synonym:
Lactobacillus  Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012 , emended name  1)
Lactobacillus  Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009 , emended name  2)
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym Paralactobacillus  Leisner et al. 2000
Lineage(full)
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae

Notes:

Comments and References:

Lactobacillus (LPSN link)
Paralactobacillus (LPSN link)
Beijerinck MW (1901)
Beijerinck M.W. "Sur les ferments lactiques de l'industrie." Archives Neerlandaises des Sciences Exactes et Naturelles (Section 2) (1901) 6:212-243. [No PubMed record available.]
Cai Y et al. (2012)
Cai, Y., Pang, H., Kitahara, M., and Ohkuma, M. "Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2012) 62:1140-1144.
Claesson MJ et al. (2008)
Claesson, M.J., van Sinderen, D., and O'Toole, P.W. "Lactobacillus phylogenomics--towards a reclassification of the genus." Int. J. Syst. Evol. Microbiol. (2008) 58:2945-2954.
Haakensen M et al. (2009)
Haakensen, M., Dobson, C.M., Hill, J.E., and Ziola, B. "Reclassification of Pediococcus dextrinicus (Coster and White 1964) Back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov., and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2009) 59:615-621.
Haakensen M et al. (2011)
Haakensen, M., Pittet, V., and Ziola, B. "Reclassification of Paralactobacillus selangorensis (Leisner et al., 2000) as Lactobacillus selangorensis comb. nov." Int. J. Syst. Evol. Microbiol. (2011) 61:2979-2983.
Leisner JJ et al. (2000)
Leisner, J.J., Vancanneyt, M., Goris, J., Christensen, H., and Rusul, G. "Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient." Int. J. Syst. Evol. Microbiol.(2000) 50:19-24.
Naser SM et al. (2007)
Naser, S.M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M., and Swings, J. "Identification of lactobacilli by pheS and rpoA gene sequence analyses." Int. J. Syst. Evol. Microbiol. (2007) 57:2777-2789.
Salvetti E et al. (2018)
Salvetti, E., Harris, H.M.B., Felis, G.E., and O'Toole, P.W. "Comparative genomics of the genus Lactobacillus reveals robust phylogroups that provide the basis for reclassification." Appl. Environ. Microbiol. (2018) 84:e00993-18. [Erratum: Appl. Environ. Microbiol. (2018) 84:e02052-18.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30(1):225-420. [No PubMed record available.]
Wittouck S et al. (2019)
Wittouck, S., Wuyts, S., Meehan, C.J., van Noort, V., and Lebeer, S. "A genome-based species taxonomy of the Lactobacillus genus complex." mSystems (2019) 4:e00264-19.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0044751 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus culture/stock collections Global Catalogue of Microorganisms
2838621812: Lactobacillus sp. HF117C1 organism-specific Integrated Microbial Genomes
2838617396: Lactobacillus sp. HF117A1_B organism-specific Integrated Microbial Genomes
2836326819: Lactobacillus sp. USDA_49 organism-specific Integrated Microbial Genomes
2836324620: Lactobacillus sp. USDA_47 organism-specific Integrated Microbial Genomes
2772190822: Lactobacillus sp. BinFWLB1mb27 organism-specific Integrated Microbial Genomes
2838624212: Lactobacillus sp. USDA918D3_B organism-specific Integrated Microbial Genomes
2799112230: Lactobacillus sp. ESL0416 organism-specific Integrated Microbial Genomes
2808606958: Lactobacillus sp. ESL0449 v2 organism-specific Integrated Microbial Genomes
2836313344: Lactobacillus sp. USDA_42 organism-specific Integrated Microbial Genomes
2838483861: Lactobacillus sp. USDA918D3_A organism-specific Integrated Microbial Genomes
2838468364: Lactobacillus sp. HF117XM_B organism-specific Integrated Microbial Genomes
2785510748: Lactobacillus sp. ESL0409 organism-specific Integrated Microbial Genomes
2799112220: Lactobacillus sp. ESL0411 organism-specific Integrated Microbial Genomes
2814122926: Lactobacillus sp. BinFWmb38 organism-specific Integrated Microbial Genomes
2799112229: Lactobacillus sp. ESL0413 organism-specific Integrated Microbial Genomes
Lactobacillus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Paralactobacillus Leisner, Vancanneyt, Goris, Christensen & Rusul, 2000 taxonomy/phylogenetic Ocean Biogeographic Information System
Lactobacillus Beijerinck, 1901 taxonomy/phylogenetic Ocean Biogeographic Information System
Lactobacillus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Lactobacillus Beijerinck, 1901 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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