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Taxonomy browser (Lactobacillus)

Lactobacillus

Taxonomy ID: 1578 (for references in articles please use NCBI:txid1578)
Scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012, nom. approb. 1)
homotypic synonym: Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009, nom. approb. 1)
NCBI BLAST® name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Paralactobacillus Leisner et al. 2000
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 545,164 28
Protein 5,685,089 74,672
Structure 419 -
Genome 205 1
Popset 1,646 1,229
Conserved Domains 18 16
GEO Datasets 1,429 44
PubMed Central 27,356 27,341
Gene 183,825 -
SRA Experiments 2,714 156
Protein Clusters 19,591 7,601
Identical Protein Groups 1,650,893 74,672
Bio Project 1,618 19
Bio Sample 5,285 109
Bio Systems 12,555 -
Assembly 2,408 -
Probe 512 2
PubChem BioAssay 509 13
Taxonomy 2,691 1

Notes:

Comments and References:

Nota BeneLactobacillus (LPSN link)

Nota BeneParalactobacillus (LPSN link)

Beijerinck MW (1901)
Beijerinck M.W. "Sur les ferments lactiques de l'industrie." Archives Neerlandaises des Sciences Exactes et Naturelles (Section 2) (1901) 6:212-243. [No PubMed record available.]

Reference to PubMed documentCai Y et al. (2012)
Cai, Y., Pang, H., Kitahara, M., and Ohkuma, M. "Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2012) 62:1140-1144.

Reference to PubMed documentClaesson MJ et al. (2008)
Claesson, M.J., van Sinderen, D., and O'Toole, P.W. "Lactobacillus phylogenomics--towards a reclassification of the genus." Int. J. Syst. Evol. Microbiol. (2008) 58:2945-2954.

Reference to PubMed documentHaakensen M et al. (2009)
Haakensen, M., Dobson, C.M., Hill, J.E., and Ziola, B. "Reclassification of Pediococcus dextrinicus (Coster and White 1964) Back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov., and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2009) 59:615-621.

Reference to PubMed documentHaakensen M et al. (2011)
Haakensen, M., Pittet, V., and Ziola, B. "Reclassification of Paralactobacillus selangorensis (Leisner et al., 2000) as Lactobacillus selangorensis comb. nov." Int. J. Syst. Evol. Microbiol. (2011) 61:2979-2983.

Reference to PubMed documentLeisner JJ et al. (2000)
Leisner, J.J., Vancanneyt, M., Goris, J., Christensen, H., and Rusul, G. "Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient." Int. J. Syst. Evol. Microbiol.(2000) 50:19-24.

Reference to PubMed documentNaser SM et al. (2007)
Naser, S.M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M., and Swings, J. "Identification of lactobacilli by pheS and rpoA gene sequence analyses." Int. J. Syst. Evol. Microbiol. (2007) 57:2777-2789.

Reference to PubMed documentSalvetti E et al. (2018)
Salvetti, E., Harris, H.M.B., Felis, G.E., and O'Toole, P.W. "Comparative genomics of the genus Lactobacillus reveals robust phylogroups that provide the basis for reclassification." Appl. Environ. Microbiol. (2018) 84:e00993-18. [Erratum: Appl. Environ. Microbiol. (2018) 84:e02052-18.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0044751 organism-specific Genomes On Line Database
Lactobacillus culture/stock collections Global Catalogue of Microorganisms
2772190822: Lactobacillus sp. BinFWLB1mb27 organism-specific Integrated Microbial Genomes
Lactobacillus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Lactobacillus Beijerinck, 1901 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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