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Taxonomy browser (Lactobacillus)

Lactobacillus

Taxonomy ID: 1578 (for references in articles please use NCBI:txid1578)
current name
Lactobacillus Beijerinck 1901 (Approved Lists 1980)
homotypic synonym:
Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009, emended name 1)
Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012, emended name 1)
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Paralactobacillus Leisner et al. 2000
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 212,712 28
Protein 1,619,818 28,089
Structure 84 -
Genome 44 1
Popset 784 685
Conserved Domains 18 16
GEO Datasets 471 44
PubMed Central 40,284 40,277
Gene 87,366 -
SRA Experiments 2,308 632
Protein Clusters 19,591 7,601
Identical Protein Groups 615,934 28,087
Bio Project 652 45
Bio Sample 4,062 576
Bio Systems 12,555 -
Assembly 1,043 -
Probe 512 2
PubChem BioAssay 82 13
Taxonomy 2,205 1

Notes:

Comments and References:

Lactobacillus (LPSN link)
Paralactobacillus (LPSN link)
Beijerinck MW (1901)
Beijerinck M.W. "Sur les ferments lactiques de l'industrie." Archives Neerlandaises des Sciences Exactes et Naturelles (Section 2) (1901) 6:212-243. [No PubMed record available.]
Cai Y et al. (2012)
Cai, Y., Pang, H., Kitahara, M., and Ohkuma, M. "Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2012) 62:1140-1144.
Claesson MJ et al. (2008)
Claesson, M.J., van Sinderen, D., and O'Toole, P.W. "Lactobacillus phylogenomics--towards a reclassification of the genus." Int. J. Syst. Evol. Microbiol. (2008) 58:2945-2954.
Haakensen M et al. (2009)
Haakensen, M., Dobson, C.M., Hill, J.E., and Ziola, B. "Reclassification of Pediococcus dextrinicus (Coster and White 1964) Back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov., and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2009) 59:615-621.
Haakensen M et al. (2011)
Haakensen, M., Pittet, V., and Ziola, B. "Reclassification of Paralactobacillus selangorensis (Leisner et al., 2000) as Lactobacillus selangorensis comb. nov." Int. J. Syst. Evol. Microbiol. (2011) 61:2979-2983.
Leisner JJ et al. (2000)
Leisner, J.J., Vancanneyt, M., Goris, J., Christensen, H., and Rusul, G. "Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient." Int. J. Syst. Evol. Microbiol.(2000) 50:19-24.
Naser SM et al. (2007)
Naser, S.M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M., and Swings, J. "Identification of lactobacilli by pheS and rpoA gene sequence analyses." Int. J. Syst. Evol. Microbiol. (2007) 57:2777-2789.
Salvetti E et al. (2018)
Salvetti, E., Harris, H.M.B., Felis, G.E., and O'Toole, P.W. "Comparative genomics of the genus Lactobacillus reveals robust phylogroups that provide the basis for reclassification." Appl. Environ. Microbiol. (2018) 84:e00993-18. [Erratum: Appl. Environ. Microbiol. (2018) 84:e02052-18.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Wittouck S et al. (2019)
Wittouck, S., Wuyts, S., Meehan, C.J., van Noort, V., and Lebeer, S. "A genome-based species taxonomy of the Lactobacillus genus complex." mSystems (2019) 4:e00264-19.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0044751 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus culture/stock collections Global Catalogue of Microorganisms
7 records from this provider organism-specific Integrated Microbial Genomes
Lactobacillus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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