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Taxonomy browser (Lactobacillus)


Taxonomy ID: 1578 (for references in articles please use NCBI:txid1578)
current name
Lactobacillus Beijerinck 1901 (Approved Lists 1980)
homotypic synonym:
Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Haakensen et al. 2009, emended name 1)
Lactobacillus Beijerinck 1901 (Approved Lists 1980) emend. Cai et al. 2012, emended name 1)
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Paralactobacillus Leisner et al. 2000
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 513,721 32
Protein 1,974,489 37,223
Structure 104 -
Genome 51 1
Popset 786 686
Conserved Domains 13 12
GEO Datasets 472 44
PubMed Central 65,955 65,945
Gene 134,123 -
SRA Experiments 4,451 1,950
Protein Clusters 19,591 7,601
Identical Protein Groups 986,141 37,153
BioProject 964 77
BioSample 10,026 1,597
Assembly 3,534 -
PubChem BioAssay 46 1
Taxonomy 2,305 1


Comments and References:

Lactobacillus (LPSN link)
Paralactobacillus (LPSN link)
Beijerinck MW (1901)
Beijerinck M.W. "Sur les ferments lactiques de l'industrie." Archives Neerlandaises des Sciences Exactes et Naturelles (Section 2) (1901) 6:212-243. [No PubMed record available.]
Cai Y et al. (2012)
Cai, Y., Pang, H., Kitahara, M., and Ohkuma, M. "Lactobacillus nasuensis sp. nov., a lactic acid bacterium isolated from silage, and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2012) 62:1140-1144.
Claesson MJ et al. (2008)
Claesson, M.J., van Sinderen, D., and O'Toole, P.W. "Lactobacillus phylogenomics--towards a reclassification of the genus." Int. J. Syst. Evol. Microbiol. (2008) 58:2945-2954.
Haakensen M et al. (2009)
Haakensen, M., Dobson, C.M., Hill, J.E., and Ziola, B. "Reclassification of Pediococcus dextrinicus (Coster and White 1964) Back 1978 (Approved Lists 1980) as Lactobacillus dextrinicus comb. nov., and emended description of the genus Lactobacillus." Int. J. Syst. Evol. Microbiol. (2009) 59:615-621.
Haakensen M et al. (2011)
Haakensen, M., Pittet, V., and Ziola, B. "Reclassification of Paralactobacillus selangorensis (Leisner et al., 2000) as Lactobacillus selangorensis comb. nov." Int. J. Syst. Evol. Microbiol. (2011) 61:2979-2983.
Leisner JJ et al. (2000)
Leisner, J.J., Vancanneyt, M., Goris, J., Christensen, H., and Rusul, G. "Description of Paralactobacillus selangorensis gen. nov., sp. nov., a new lactic acid bacterium isolated from chili bo, a Malaysian food ingredient." Int. J. Syst. Evol. Microbiol.(2000) 50:19-24.
Naser SM et al. (2007)
Naser, S.M., Dawyndt, P., Hoste, B., Gevers, D., Vandemeulebroecke, K., Cleenwerck, I., Vancanneyt, M., and Swings, J. "Identification of lactobacilli by pheS and rpoA gene sequence analyses." Int. J. Syst. Evol. Microbiol. (2007) 57:2777-2789.
Salvetti E et al. (2018)
Salvetti, E., Harris, H.M.B., Felis, G.E., and O'Toole, P.W. "Comparative genomics of the genus Lactobacillus reveals robust phylogroups that provide the basis for reclassification." Appl. Environ. Microbiol. (2018) 84:e00993-18. [Erratum: Appl. Environ. Microbiol. (2018) 84:e02052-18.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Wittouck S et al. (2019)
Wittouck, S., Wuyts, S., Meehan, C.J., van Noort, V., and Lebeer, S. "A genome-based species taxonomy of the Lactobacillus genus complex." mSystems (2019) 4:e00264-19.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0044751 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus culture/stock collections Global Catalogue of Microorganisms
15 records from this provider organism-specific Integrated Microbial Genomes
Lactobacillus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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