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Taxonomy browser (Clostridioides difficile)

Clostridioides difficile

Taxonomy ID: 1496 (for references in articles please use NCBI:txid1496)
current name
Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
type strain of Clostridioides difficile: CGMCC:1.2184, ATCC:9689, BCRC:10642, CCUG:4938, CIP:104282, DSM:1296, JCM:1296, BCCM/LMG:15861, NCIMB:10666, NCTC:11209
homotypic synonym:
"Bacillus difficilis" Hall and O'Toole 1935, effective name 1)
"Peptoclostridium difficile" Yutin and Galperin 2013, effective name 1)
Clostridium difficile (Hall and O'Toole 1935) Prevot 1938 (Approved Lists 1980), nom. approb. 2)
includes:
Clostridium sp. HMSC19D05
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Clostridioides
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,296,277 1,208,287 251
Protein 7,370,817 6,488,267 -
Structure 294 157 -
Genome 1 1 -
Popset 142 142 -
Conserved Domains 5 3 -
GEO Datasets 932 662 -
PubMed Central 32,847 32,847 -
Gene 27,174 11,638 -
SRA Experiments 29,871 29,067 -
Protein Clusters 3,929 3,929 -
Identical Protein Groups 730,439 690,368 -
BioProject 903 583 -
BioSample 35,112 34,183 13
Assembly 17,356 16,916 3
Genetic Testing Registry 2 2 -
PubChem BioAssay 857 839 -
Taxonomy 296 1 -

Notes:

Comments and References:

Hall IC & O'Toole E (1935)
Hall, I.C., and O'Toole, E. "Intestinal flora in newborn infants with a description of a new pathogenic anaerobe, Bacillus difficilis." Am. J. Dis. Child. (1935) 49:390-402. [No PubMed record available.]
Lawson PA et al. (2016)
Lawson, P.A., Citron, D.M., Tyrrell, K.L., and Finegold, S.M. "Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prevot 1938." Anaerobe (2016) 40:95-99.
Prevot AR (1938b)
Prevot, A.R. "Etudes de systematique bacterienne. IV. Critique de la conception actuelle du genre Clostridium." Ann. Inst. Pasteur (Paris) (1938) 61:72-91. [No PubMed record available.]
Skerman VBD et al. (1980) (Clostridium difficile)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
VALIDATION LIST No. 171 (2016), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.001585
Validation List No. 171: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2016) 66:3761-3764.
Yutin N & Galperin MY (2013)
Yutin, N., and Galperin, M.Y. "A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia." Environ. Microbiol. (2013) 15:2631-2641.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridioides difficile meta-databases BacDive
6 records from this provider organism-specific BioCyc
Clostridium difficile (Hall and O'Toole 1935) PrA%A9vot 1938 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
30 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Clostridium difficile culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
309 records from this provider organism-specific Integrated Microbial Genomes
Clostridioides difficile taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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