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Taxonomy browser (Caenorhabditis brenneri)

Caenorhabditis brenneri

Taxonomy ID: 135651 (for references in articles please use NCBI:txid135651)
Scientific name: Caenorhabditis brenneri Sudhaus & Kiontke, 2007
Inherited blast name: nematodes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 5 (Invertebrate Mitochondrial)
Other names:
includes: Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280)
includes: Caenorhabditis sp. 4 (CE-II)
equivalent name: Caenorhabditis CB5161
equivalent name: Caenorhabditis n. sp. CB5161
equivalent name: Caenorhabditis sp. 1 CB5161
equivalent name: Caenorhabditis sp. CB5161
equivalent name: Caenorhabditis sp. PB2801
Lineage( abbreviated )
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
   Entrez records   
Database name Direct links
Nucleotide 4,259
Nucleotide EST 30,074
Nucleotide GSS 4
Protein 31,786
Genome 1
Popset 35
GEO Datasets 64
PubMed Central 146
Gene 36
SRA Experiments 50
Bio Project 7
Bio Sample 56
Assembly 2
Clone DB 43,064
Taxonomy 1

Comments and References:

Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280)
This undescribed species is discussed in the WormBook chapter "Ecology of Caenorhabditis species," by Karin Kiontke and Walter Sudhaus, http://www.wormbook.org

Nota BeneSudhaus & Kiontke (2007)
Sudhaus W. & Kiontke, K. 2007. Comparison of the cryptic nematode species Caenorhabditis brenneri sp. n. and C. remanei (Nematoda: Rhabditidae) with the stem species pattern ofthe Caenorhabditis Elegans group. Zootaxa 1456: 45-62.


Genome Information

Go to NCBI genomic BLAST page for Caenorhabditis brenneri
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND PCR PRIMERWALK SHOTGUN WGS ALL
WUGSC - Washington University, Genome Sequencing Center
135,533 3 2,105 40,145 2,675,872 2,853,658
Totals per type
135,533 3 2,105 40,145 2,675,872 2,853,658

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0002733 organism-specific Genomes On Line Database
Caenorhabditis brenneri taxonomy/phylogenetic Lifemap
nematode (genome proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Caenorhabditis sp. CB5161 taxonomy/phylogenetic TreeBase
WebScipio: Caenorhabditis brenneri organism-specific WebScipio - eukaryotic gene identification
diArk: Caenorhabditis brenneri organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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