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Taxonomy browser (Staphylococcus aureus)

Staphylococcus aureus

Taxonomy ID: 1280 (for references in articles please use NCBI:txid1280)
current name
Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980) Rosenbach 1884
type strain of Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980): ATCC:12600, ATCC:12600-U, CCM:885, CCUG:1800, CIP:65.8, DSM:20231, HAMBI:66, JCM:20624, NBRC:100910, NCAIM B.01065, NCCB:72047, NCTC:8532, NCDO:949
homotypic synonym:
"Staphylococcus pyogenes aureus" Rosenbach 1884, effective name 1)
"Micrococcus aureus" (Rosenbach 1884) Zopf 1885, effective name 1)
Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980) emend. Madhaiyan et al. 2020, emended name 2) in [Madhaiyan M et al. (2020b)]
includes:
Staphylococcus aureus subsp. aureus (Rosenbach 1884) De La Fuente et al. 1985
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Host: human
Other names:
heterotypic synonym
"Staphlococcus pyogenes citreus" Passet 1885, effective name 1)
heterotypic synonym
"Micrococcus pyogenes" Lehmann and Neumann 1896, effective name 1)
heterotypic synonym
Staphylococcus aureus subsp. anaerobius De La Fuente et al. 1985
type strain of Staphylococcus aureus subsp. anaerobius: ATCC:35844, CCUG:37246, CIP:103780, DSM:20714, personal::MVF-7
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,422,315 1,965,916 264
Protein 34,029,022 23,075,890 -
Structure 2,337 1,427 -
Genome 1 1 -
Popset 774 773 -
Conserved Domains 51 30 -
GEO Datasets 4,997 4,304 -
PubMed Central 162,912 162,912 -
Gene 147,321 15,281 -
SRA Experiments 122,812 112,756 -
GEO Profiles 139,687 93,657 -
Protein Clusters 3,933 3,933 -
Identical Protein Groups 1,712,563 1,652,031 -
BioProject 7,226 2,777 -
BioSample 138,862 130,706 20
Assembly 78,778 74,290 9
Genetic Testing Registry 1 1 -
PubChem BioAssay 28,595 28,000 -
Taxonomy 4,638 1 -

Notes:

Comments and References:
Madhaiyan M et al. (2020b), PubMed: abstract
Madhaiyan, M., Wirth, J.S., and Saravanan, V.S. "Phylogenomic analyses of the Staphylococcaceae family suggest the reclassification of five species within the genus Staphylococcus as heterotypic synonyms, the promotion of five subspecies to novel species, the taxonomic reassignment of five Staphylococcus species to Mammaliicoccus gen. nov., and the formal assignment of Nosocomiicoccus to the family Staphylococcaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(11):5926-5936.
Cole K et al. (2019), other link:https://mra.asm.org/content/8/17/e00062-19
Cole, K., Foster, D., Russell, J.E., Golubchik, T., Llewelyn, M., Wilson, D.J., Crook, D., and Paul, J., Modernising Medical Microbiology Consortium. "Draft genome sequences of 64 type strains of 50 species and 25 subspecies of the genus Staphylococcus Rosenbach 1884." Microbiol. Resour. Announc. (2019) 8:e00062-19.
De La Fuente R et al. (1985)
De La Fuente, R., Suarez, G., and Schleifer, K.H. "Staphylococcus aureus subsp. anaerobius subsp. nov., the causal agent of abscess disease of sheep." Int. J. Syst. Bacteriol. (1985) 35:99-102. [No PubMed record available.]
Howey RT et al. (1990)
Howey, R.T., Lock, C.M., and Moore, L.V.H. "Subspecies names automatically created by Rule 46." Int. J. Syst. Bacteriol. (1990) 40:317-319. [No PubMed record available.]
Rosenbach FJ (1884)
Rosenbach, F.J. "Microorganismen bei den Wund-Infections-Krankheiten des Menschen." J.F. Bergmann, Wiesbaden (1884) pp. 1-122. [No PubMed record available.]
Pantucek R et al. (1996)
Pantucek, R., Gotz, F., Doskar, J., and Rosypal, S. "Genomic variability of Staphylococcus aureus and the other coagulase-positive Staphylococcus species estimated by macrorestriction analysis using pulsed-field gel electrophoresis." Int. J. Syst. Bacteriol. (1996) 46:216-222.
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus aureus meta-databases BacDive
200 records from this provider organism-specific BioCyc
165 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Staphylococcus aureus culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
1077 records from this provider organism-specific Integrated Microbial Genomes
Staphylococcus aureus taxonomy/phylogenetic Integrated Taxonomic Information System
Staphylococcus aureus taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Sanger companies/research institutes The Sanger Centre
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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