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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 130 11,225 -
BioSample 917 258,289 -
Conserved Domains 68 120 -
GEO DataSets 2 6,397 -
Gene - 443,060 -
GTR - 8 -
Identical Protein Groups 221,189 6,955,801 -
Nucleotide 908 4,068,058 22,960
PubChem BioAssay 391 37,642 -
PMC 218,622 218,645 -
Protein 221,516 46,367,180 -
SRA 796 216,781 -
Structure 4 2,860 -
Taxonomy 9,293 9,293 -

Staphylococcus

Taxonomy ID: 1279 (for references in articles please use ncbitaxon:1279)
current name
Staphylococcus  Rosenbach 1884 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
homotypic synonym:
Staphylococcus  Rosenbach 1884 (Approved Lists 1980) emend. Bello et al. 2023 , emended name  1) in  in  [Bello S et al. (2023)] , [List of Changes in Taxonomic Opinion No. 39 (2024)]
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym "Aurococcus"  Winslow and Rogers 1906 , effective name  2)
Lineage(full)
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bello S et al. (2023) , Pubmed: abstract
Bello, S., Mudassir, S.H., Rudra, B., and Gupta, R.S. "Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov." Antonie van Leeuwenhoek (2023) 116(10):937-973.
List of Changes in Taxonomic Opinion No. 39 (2024) , Pubmed: abstract
Oren, A., and Göker, M. "Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 39." Int. J. Syst. Evol. Microbiol. (2024) 74(1):006145.
Staphylococcus (LPSN link)
Chesneau O et al. (2000)
Chesneau, O., Morvan, A., Aubert, S., and el Solh, N. "The value of rRNA gene restriction site polymorphism analysis for delineating taxa in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2000) 50:689-697.
Freney J et al. (1999)
Freney, J., Kloos, W.E., Hajek, V., Webster, J.A., Bes, M., Brun, Y., and Vernozy-Rozand, C. "Recommended minimal standards for description of new staphylococcal species. Subcommittee on the taxonomy of staphylococci and streptococci of the InternationalCommittee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1999) 49:489-502.
Kwok AY et al. (1999)
Kwok, A.Y., Su, S.C., Reynolds, R.P., Bay, S.J., Av-Gay, Y., Dovichi, N.J., and Chow, A.W. "Species identification and phylogenetic relationships based on partial HSP60 gene sequences within the genus Staphylococcus." Int. J. Syst. Bacteriol. (1999) 49:1181-1192.
Kwok AYC & Chaw AW (2003)
Kwok, A.Y.C., and Chow, A.W. "Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences." Int. J. Syst. Evol. Microbiol. (2003) 53:87-92. Published online 21 June 2002. DOI 10.1099/ijs.0.02210-0
Mendoza M et al. (1998)
Mendoza, M., Meugnier, H., Bes, M., Etienne, J., and Freney, J. "Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis." Int. J. Syst. Bacteriol. (1998) 48:1049-1055.
Rosenbach FJ (1884)
Rosenbach, F.J. "Microorganismen bei den Wund-Infections-Krankheiten des Menschen." J.F. Bergmann, Wiesbaden (1884) pp. 1-122. [No PubMed record available.]
Shah MM et al. (2007)
Shah, M.M., Iihara, H., Noda, M., Song, S.X., Nhung, P.H., Ohkusu, K., Kawamura, Y., and Ezaki, T. "dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2007) 57:25-30.
Takahashi T et al. (1999)
Takahashi, T., Satoh, I., and Kikuchi, N. "Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis." Int. J. Syst. Bacteriol. (1999) 49::725-728.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0642652 organism-specific Genomes On Line Database
2740892557: Staphylococcus sp. JDR108L-110-1 organism-specific Integrated Microbial Genomes
2838519137: Staphylococcus sp. USDA918AW1_A organism-specific Integrated Microbial Genomes
8071795820: Staphylococcus ACRSN organism-specific Integrated Microbial Genomes
8045499170: Staphylococcus sp. n55 organism-specific Integrated Microbial Genomes
Staphylococcus taxonomy/phylogenetic Integrated Taxonomic Information System
Staphylococcus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Staphylococcus taxonomy/phylogenetic Ocean Biogeographic Information System
Staphylococcus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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