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Taxonomy browser (Staphylococcus)


Taxonomy ID: 1279 (for references in articles please use NCBI:txid1279)
current name
Staphylococcus Rosenbach 1884 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
homotypic synonym:
Staphylococcus Rosenbach 1884 (Approved Lists 1980) emend. Bello et al. 2023, emended name 1) in [Bello S et al. (2023)]
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Aurococcus" Winslow and Rogers 1906, effective name 2)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Bacillales; Staphylococcaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 3,490,694 902
Protein 41,667,436 168,515
Structure 2,550 2
Genome 68 1
Popset 3,079 2,305
Conserved Domains 113 60
GEO Datasets 5,446 2
PubMed Central 202,588 198,550
Gene 398,825 -
SRA Experiments 145,868 601
GEO Profiles 139,687 -
Protein Clusters 8,380 6,123
Identical Protein Groups 5,094,071 168,477
BioProject 8,986 84
BioSample 170,419 654
Assembly 94,102 -
Genetic Testing Registry 1 -
PubChem BioAssay 34,582 390
Taxonomy 9,164 1


Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bello S et al. (2023), PubMed: abstract
Bello, S., Mudassir, S.H., Rudra, B., and Gupta, R.S. "Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov." Antonie van Leeuwenhoek (2023) 116(10):937-973.
Staphylococcus (LPSN link)
Chesneau O et al. (2000)
Chesneau, O., Morvan, A., Aubert, S., and el Solh, N. "The value of rRNA gene restriction site polymorphism analysis for delineating taxa in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2000) 50:689-697.
Freney J et al. (1999)
Freney, J., Kloos, W.E., Hajek, V., Webster, J.A., Bes, M., Brun, Y., and Vernozy-Rozand, C. "Recommended minimal standards for description of new staphylococcal species. Subcommittee on the taxonomy of staphylococci and streptococci of the InternationalCommittee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1999) 49:489-502.
Kwok AY et al. (1999)
Kwok, A.Y., Su, S.C., Reynolds, R.P., Bay, S.J., Av-Gay, Y., Dovichi, N.J., and Chow, A.W. "Species identification and phylogenetic relationships based on partial HSP60 gene sequences within the genus Staphylococcus." Int. J. Syst. Bacteriol. (1999) 49:1181-1192.
Kwok AYC & Chaw AW (2003)
Kwok, A.Y.C., and Chow, A.W. "Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences." Int. J. Syst. Evol. Microbiol. (2003) 53:87-92. Published online 21 June 2002. DOI 10.1099/ijs.0.02210-0
Mendoza M et al. (1998)
Mendoza, M., Meugnier, H., Bes, M., Etienne, J., and Freney, J. "Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis." Int. J. Syst. Bacteriol. (1998) 48:1049-1055.
Rosenbach FJ (1884)
Rosenbach, F.J. "Microorganismen bei den Wund-Infections-Krankheiten des Menschen." J.F. Bergmann, Wiesbaden (1884) pp. 1-122. [No PubMed record available.]
Shah MM et al. (2007)
Shah, M.M., Iihara, H., Noda, M., Song, S.X., Nhung, P.H., Ohkusu, K., Kawamura, Y., and Ezaki, T. "dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2007) 57:25-30.
Takahashi T et al. (1999)
Takahashi, T., Satoh, I., and Kikuchi, N. "Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis." Int. J. Syst. Bacteriol. (1999) 49::725-728.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0106901 organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
Staphylococcus taxonomy/phylogenetic Integrated Taxonomic Information System
Staphylococcus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Staphylococcus taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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