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Taxonomy browser (Staphylococcus)


Taxonomy ID: 1279 (for references in articles please use NCBI:txid1279)
current name
Staphylococcus Rosenbach 1884
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Aurococcus" Winslow and Rogers 1906, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 3,196,295 902
Protein 39,311,424 170,473
Structure 2,332 1
Genome 61 1
Popset 2,981 2,285
Conserved Domains 120 70
GEO Datasets 4,709 2
PubMed Central 156,760 155,949
Gene 360,088 -
SRA Experiments 106,801 106
GEO Profiles 139,687 -
Protein Clusters 8,380 6,123
Identical Protein Groups 2,985,031 170,459
Bio Project 7,930 61
Bio Sample 121,678 198
Bio Systems 15,863 -
Assembly 35,787 -
Genetic Testing Registry 1 -
Probe 731 6
PubChem BioAssay 30,191 386
Taxonomy 9,044 1


Comments and References:

Staphylococcus (LPSN link)
Chesneau O et al. (2000)
Chesneau, O., Morvan, A., Aubert, S., and el Solh, N. "The value of rRNA gene restriction site polymorphism analysis for delineating taxa in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2000) 50:689-697.
Freney J et al. (1999)
Freney, J., Kloos, W.E., Hajek, V., Webster, J.A., Bes, M., Brun, Y., and Vernozy-Rozand, C. "Recommended minimal standards for description of new staphylococcal species. Subcommittee on the taxonomy of staphylococci and streptococci of the InternationalCommittee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1999) 49:489-502.
Kwok AY et al. (1999)
Kwok, A.Y., Su, S.C., Reynolds, R.P., Bay, S.J., Av-Gay, Y., Dovichi, N.J., and Chow, A.W. "Species identification and phylogenetic relationships based on partial HSP60 gene sequences within the genus Staphylococcus." Int. J. Syst. Bacteriol. (1999) 49:1181-1192.
Kwok AYC & Chaw AW (2003)
Kwok, A.Y.C., and Chow, A.W. "Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences." Int. J. Syst. Evol. Microbiol. (2003) 53:87-92. Published online 21 June 2002. DOI 10.1099/ijs.0.02210-0
Mendoza M et al. (1998)
Mendoza, M., Meugnier, H., Bes, M., Etienne, J., and Freney, J. "Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis." Int. J. Syst. Bacteriol. (1998) 48:1049-1055.
Rosenbach FJ (1884)
Rosenbach, F.J. "Microorganismen bei den Wund-Infections-Krankheiten des Menschen." J.F. Bergmann, Wiesbaden (1884) pp. 1-122. [No PubMed record available.]
Shah MM et al. (2007)
Shah, M.M., Iihara, H., Noda, M., Song, S.X., Nhung, P.H., Ohkusu, K., Kawamura, Y., and Ezaki, T. "dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2007) 57:25-30.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Takahashi T et al. (1999)
Takahashi, T., Satoh, I., and Kikuchi, N. "Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis." Int. J. Syst. Bacteriol. (1999) 49::725-728.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0106901 organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
Staphylococcus taxonomy/phylogenetic Integrated Taxonomic Information System
Staphylococcus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Staphylococcus taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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