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Taxonomy browser (Ruminococcus flavefaciens)

Ruminococcus flavefaciens

Taxonomy ID: 1265 (for references in articles please use NCBI:txid1265)
current name
Ruminococcus flavefaciens Sijpesteijn 1948
type strain of Ruminococcus flavefaciens: ATCC:19208
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 20,321 18,531 73
Protein 79,053 75,713 -
Structure 26 13 -
Genome 1 1 -
Popset 13 13 -
Conserved Domains 2 2 -
GEO Datasets 13 4 -
PubMed Central 1,163 1,163 -
Gene 5,739 2,463 -
SRA Experiments 33 24 -
Protein Clusters 2,083 2,083 -
Identical Protein Groups 97,072 96,601 -
BioProject 49 38 -
BioSample 137 126 1
Assembly 110 101 1
PubChem BioAssay 4 4 -
Taxonomy 9 1 -

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Willems A & Collins MD (1995e)
Willems, A., and Collins, M.D. "Phylogenetic analysis of Ruminococcus flavefaciens, the type species of the genus Ruminococcus, does not support the reclassification of Streptococcus hansenii and Peptostreptococcus productus as ruminococci." Int. J. Syst. Bacteriol. (1995) 45:572-575.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ruminococcus flavefaciens meta-databases BacDive
Ruminococcus flavefaciens Sijpesteijn 1948 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
6 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Ruminococcus flavefaciens culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
6 records from provider organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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