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Taxonomy browser (Firmicutes)

Firmicutes

Taxonomy ID: 1239 (for references in articles please use NCBI:txid1239)
current name
Firmicutes corrig. Gibbons and Murray 1978
NCBI BLAST name: firmicutes
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Bacillota
heterotypic synonym
Bacillus/Clostridium group
heterotypic synonym
Clostridium group firmicutes
heterotypic synonym
Firmacutes
heterotypic synonym
Low G+C firmicutes
heterotypic synonym
clostridial firmicutes
heterotypic synonym
Bacillaeota Oren et al. 2015
common name(s) low G+C Gram-positive bacteria, low GC Gram+
blast name
firmicutes
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 13,188,135 1
Protein 186,765,727 29,848
Structure 13,072 -
Genome 4,410 1
Popset 16,075 8,979
Conserved Domains 1,967 527
GEO Datasets 24,324 -
PubMed Central 324,862 25,938
Gene 3,623,277 -
SRA Experiments 360,768 431
GEO Profiles 151,987 -
Protein Clusters 214,957 4,278
Identical Protein Groups 40,242,928 29,837
Bio Project 29,086 20
Bio Sample 488,018 518
Bio Systems 155,977 -
Assembly 142,968 -
Probe 6,100 2
PubChem BioAssay 47,923 1
Taxonomy 84,727 1

Comments and References:

Bacteriological Code and rank "Phylum"
The International Code of Nomenclature of Bacteria (1990 Revision) does not recognize any rank higher than Class (Rule 5b) and the names of phyla are not to be regarded as having been validly published even though they may have been published in a validation or notification list, or in the Approved List of Bacterial Names.
Ahmad S et al. (1999)
Ahmad, S., Selvapandiyan, A., and Bhatnagar, R.K. "A protein-based phylogenetic tree for gram-positive bacteria derived from hrcA, a unique heat-shock regulatory gene." Int. J. Syst. Bacteriol. (1999) 49:1387-1394.
Ahmad S et al. (2000b)
Ahmad, S., Selvapandiyan, A., and Bhatnagar, R.K. "Phylogenetic analysis of gram-positive bacteria based on grpE, encoded by the dnaK operon." Int. J. Syst. Evol. Microbiol. (2000) 50:1761-1766.
BMSB 2nd ed. Taxonomic Outline
Garrity, G.M., and Holt, J.G. "Taxonomic Outline of the Archaea and Bacteria." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). pp. 155-166. [No PubMed record available.]
Gibbons NE & Murray RGE (1978)
Gibbons, N.E., and Murray, R.G.E. "Proposals concerning the higher taxa of bacteria." Int. J. Syst. Bacteriol. (1978) 28:1-6. [No PubMed record available.]
Murray RGE (1984)
Murray, R.G.E. "The higher taxa, or, a place for everything...?" In: N.R. Krieg and J.G. Holt (eds.) Bergey's Manual of Systematic Bacteriology, vol. 1, The Williams & Wilkins Co., Baltimore (1984). pp. 31-34. [No PubMed record available.]
Oren A et al. (2015)
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65:4284-4287.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Whitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68:967-969.
Woese CR et al. (1985)
Woese, C.R., Stackebrandt, E., Macke, T.J., and Fox, G.E. "A phylogenetic definition of the major eubacterial taxa." Syst. Appl. Microbiol. (1985) 6:143-151.
Wolf M et al. (2004)
Wolf, M., Muller, T., Dandekar, T., and Pollack, J.D. "Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data." Int. J. Syst. Evol. Microbiol. (2004) 54:871-875. Published online 12 December 2003: DOI 10.1099/ijs.0.02868-0
Zhang W & Lu Z (2015)
Zhang, W., and Lu, Z. "Phylogenomic evaluation of members above the species level within the phylum Firmicutes based on conserved proteins." Environ. Microbiol. Rep. (2015) 7:273-281.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Firmicutes taxonomy/phylogenetic Encyclopedia of life
244 records from this provider organism-specific Integrated Microbial Genomes
Firmicutes taxonomy/phylogenetic Lifemap
Firmicutes taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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