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Taxonomy browser (Pseudomonadota)

Pseudomonadota

Taxonomy ID: 1224 (for references in articles please use NCBI:txid1224)
current name
Pseudomonadota corrig. Garrity et al. 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Proteobacteriota" Panda et al. 2022, effective name, orth. var. 1),2) in [Panda A et al. (2022)]
Proteobacteria Stackebrandt et al. 1988, nom. illeg. 3),4)
"Proteobacteria" Garrity et al. 2005 3) in [Validation List No. 106 (2005), Garrity GM et al. (2005)]
equivalent:
Proteobacteria
NCBI BLAST name: proteobacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Alphaproteobacteriota" Whitman et al. 2018
homotypic synonym:
"Alphaproteobacteraeota" Oren et al. 2015, effective name
common name(s) purple photosynthetic bacteria and relatives
blast name
proteobacteria
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati
   Entrez records   
Database name Subtree links Direct links
Nucleotide 55,843,689 12
Protein 572,226,290 36,747
Structure 35,502 1
Popset 38,290 11,992
Conserved Domains 6,730 2,484
GEO Datasets 73,661 -
PubMed Central 858,224 57,624
Gene 13,071,928 -
SRA Experiments 1,879,753 3,793
GEO Profiles 710,507 -
Protein Clusters 407,004 8,044
Identical Protein Groups 254,074,280 36,585
BioProject 81,498 206
BioSample 2,294,345 4,323
Assembly 1,411,693 -
Genetic Testing Registry 7 -
PubChem BioAssay 65,424 -
Taxonomy 232,515 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Panda A et al. (2022), PubMed: abstract
Panda, A., Islam, S.T., and Sharma, G. "Harmonizing prokaryotic nomenclature: Fixing the fuss over phylum name flipping." mBio (2022) 13(3):e0097022.
Validation List No. 106 (2005)
Validation of publication of new names and new combinations previously effectively published outside the IJSEM. International Journal of Systematic and Evolutionary Microbiology 55(6):2235-2238.
Garrity GM et al. (2005)
Garrity, G.M., Bell, J.A., and Lilburn, T. "Phylum XIV. Proteobacteria phyl. nov." In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds.), Bergeys Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria), Springer, New York, 2005, p. 1.
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Euzeby JP & Tindall BJ (2001)
Euzeby, J.P., and Tindall, B.J. "Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2001) 51(2):725-727.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Proteobacteria taxonomy/phylogenetic Barcodes of Life
Proteobacteria taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
135 records from this provider organism-specific Integrated Microbial Genomes
Proteobacteria taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Proteobacteria taxonomy/phylogenetic Ocean Biogeographic Information System
Pseudomonadota | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Proteobacteria taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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