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Taxonomy browser (Sphingobium xenophagum)

Sphingobium xenophagum

Taxonomy ID: 121428 (for references in articles please use NCBI:txid121428)
current name
Sphingobium xenophagum (Stolz et al. 2000) Pal et al. 2006
basionym:
Sphingomonas xenophaga Stolz et al. 2000
type strain of Sphingomonas xenophaga: CIP:107206, DSM:6383, personal::BN6, NBRC:107872
homotypic synonym:
Sphingobium xenophagum (Stolz et al. 2000) Pal et al. 2006 emend. Feng et al. 2019, emended name 1) in [Feng GD et al. (2019)]
includes:
Sphingomonas sp. BN6
Sphingomonas sp. OW59
Sphingomonas sp. str. BN6
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Sphingobium hydrophobicum Chen et al. 2016
type strain of Sphingobium hydrophobicum: personal::C1, CCTCC:AB 2015198, KCTC:42740
includes:
Sphingobium sp. C1
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,617 1,077 287
Protein 26,173 25,915 -
Genome 1 1 -
Popset 11 11 -
PubMed Central 97 97 -
Gene 4,371 1 -
SRA Experiments 15 15 -
Protein Clusters 2,292 2,292 -
Identical Protein Groups 20,239 19,360 -
BioProject 17 15 -
BioSample 23 20 3
Assembly 12 10 -
Taxonomy 3 1 -

Notes:

Comments and References:

Feng GD et al. (2019), PubMed: abstract
Feng, G.-D., Chen, M.-B., Zhang, X.-J., Wang, D.-D., and Zhu, H.-H. "Whole genome sequences reveal the presence of 11 heterotypic synonyms in the genus Sphingobium and emended descriptions of Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum and Sphingobium cupriresistens." Int. J Syst. Evol. Microbiol. (2019) 69(7):2161-2165. [Erratum: Int. J. Syst. Evol. Microbiol. (2019) 69(12):3985.]
Chen X et al. (2016c)
Chen, X., Wang, H., Xu, J., Song, D., Sun, G., and Xu, M. "Sphingobium hydrophobicum sp. nov., a hydrophobic bacterium isolated from electronic-waste-contaminated sediment." Int. J. Syst. Evol. Microbiol. (2016) 66:3912-3916.
Pal R et al. (2006)
Pal, R., Bhasin, V.K., and Lal, R. "Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis comb. nov., respectively." Int. J. Syst. Evol. Microbiol. (2006) 56:667-670. Published online 11 November 2005. doi:10.1099/ijs.0.64161-0
Stolz A et al. (2000)
Stolz, A., Schmidt-Maag, C., Denner, E.B.M., Busse, H.J., Egli, T., and Kampfer, P. "Description of Sphingomonas xenophaga sp. nov. for strains BN6T and N,N which degrade xenobiotic aromatic compounds." Int. J. Syst. Evol. Microbiol. (2000) 50:35-41.
Feng GD et al. (2019), doi:10.1099/ijsem.0.003432
Feng, G.-D., Chen, M.-B., Zhang, X.-J., Wang, D.-D., and Zhu, H.-H. "Whole genome sequences reveal the presence of 11 heterotypic synonyms in the genus Sphingobium and emended descriptions of Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum and Sphingobium cupriresistens." Int. J Syst. Evol. Microbiol. (2019) 69(7):2161-2165. [Erratum: Int. J. Syst. Evol. Microbiol. (2019) 69(12):3985.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Sphingobium xenophagum meta-databases BacDive
Sphingobium xenophagum (Stolz et al. 2000) Pal et al. 2006 taxonomy/phylogenetic Encyclopedia of life
Sphingobium xenophagum culture/stock collections Global Catalogue of Microorganisms
2 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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