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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 12 18 -
BioSample 24 25 -
Gene 9,502 9,503 -
Identical Protein Groups 37,077 41,353 -
Nucleotide 960 996 173
PMC 10 10 -
Protein 57,585 65,577 -
SRA 16 16 -
Taxonomy 4 4 -

Agrobacterium salinitolerans

Taxonomy ID: 1183413 (for references in articles please use ncbitaxon:1183413)
current name
Agrobacterium salinitolerans  Yan et al. 2017 in [Yan J et al. (2017b)]
type strain of Agrobacterium salinitolerans: personal : YIC 5082 , HAMBI : 3646 , BCCM/LMG : 29287
includes:
Agrobacterium sp. YIC 5082
Rhizobium sp. YIC4104
Rhizobium sp. YIC 5082
Rhizobium sp. YIC5082
Agrobacterium sp. YIC5082
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym Agrobacterium genomosp. 9
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium

Comments and References:
Yan J et al. (2017b) , Pubmed: abstract
Yan, J., Li, Y., Yan, H., Chen, W.F., Zhang, X., Wang, E.T., Han, X.Z., and Xie, Z.H. "Agrobacterium salinitolerans sp. nov., a saline-alkaline-tolerant bacterium isolated from root nodule of Sesbania cannabina." Int. J. Syst. Evol. Microbiol. (2017) 67(6):1906-1911.
de Lajudie PM & Young JPW (2018)
de Lajudie, P.M., and Young, J.P.W. "International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of rhizobia and agrobacteria Minutes of the closed meeting, Granada, 4 September 2017." Int. J. Syst. Evol. Microbiol. (2018) 68(10):3363-3368. [N.B.: Agrobacterium genomospp. G7 and G9 are considered to be synonymous with "Agrobacterium deltaense" Yan et al. 2017 and Agrobacterium salinitolerans Yan et al. 2017, respectively.]
Mougel C et al. (2002)
Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. "A mathematical method for determining genome divergence and species delineation using AFLP." Int. J. Syst. Evol. Microbiol. (2002) 52(2):573-586. [N.B.: source of 'Agrobacterium genomic group' nomenclature]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Agrobacterium salinitolerans type strain (BD-ID 140485) meta-databases BacDive
Agrobacterium salinitolerans YIC 5082 organism-specific BioCyc
Agrobacterium salinitolerans YIC 5082 organism-specific BioCyc
Agrobacterium salinitolerans YIC 5082 organism-specific BioCyc
GOLD: 5 Organisms organism-specific Genomes On Line Database
2858630679: Agrobacterium salinitolerans YIC 5082 organism-specific Integrated Microbial Genomes
8056029583: Agrobacterium salinitolerans ST15.13.097 organism-specific Integrated Microbial Genomes
Agrobacterium salinitolerans | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Agrobacterium salinitolerans type strain (SI-ID 272883) meta-databases StrainInfo, Leibniz Institute DSMZ
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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