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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 40 63 -
BioSample 216 432 -
GEO DataSets 6 140 -
Gene 11,189 22,315 -
Identical Protein Groups 46,510 47,966 -
Nucleotide 1,581 2,668 978
PubChem BioAssay - 1 -
PMC 258 258 -
Protein 161,542 175,210 -
SRA 202 392 -
Structure - 257 -
Taxonomy 3 3 -

Agrobacterium fabrum

Taxonomy ID: 1176649 (for references in articles please use ncbitaxon:1176649)
current name
"Agrobacterium fabrum"  Lassalle et al. 2011 , effective name  1)
type strain of Agrobacterium fabrum: personal : C58 , personal : Dickey C-58 , ATCC : 33970 , CIP : 104333 , BCCM/LMG : 287 , NCCB : 85029
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym Agrobacterium genomovar 8
heterotypic synonym Agrobacterium genomic species 8
heterotypic synonym Agrobacterium genomic group 8
heterotypic synonym Agrobacterium tumefaciens genomovar G8
heterotypic synonym Agrobacterium genomosp. 8
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex

Notes:

Comments and References:

Lassalle F et al. (2011)
Lassalle, F., Campillo, T., Vial, L., Baude, J., Costechareyre, D., Chapulliot, D., Shams, M., Abrouk, D., Lavire, C., Oger-Desfeux, C., Hommais, F., Gueguen, L., Daubin, V., Muller, D., and Nesme, X. "Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens." Genome Biol Evol. (2011) 3:762-781.
Mougel C et al. (2002)
Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. "A mathematical method for determining genome divergence and species delineation using AFLP." Int. J. Syst. Evol. Microbiol. (2002) 52:573-586. [N.B.: source of 'Agrobacterium genomic group' nomenclature]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: 18 Organisms organism-specific Genomes On Line Database
651324008: Agrobacterium sp. ATCC 31749 organism-specific Integrated Microbial Genomes
2858613860: Agrobacterium fabrum ATCC 31749 organism-specific Integrated Microbial Genomes
2850604028: Agrobacterium fabrum 1D132 organism-specific Integrated Microbial Genomes
2846764896: Agrobacterium fabrum 12D13 organism-specific Integrated Microbial Genomes
8023943185: Agrobacterium fabrum N40/94 organism-specific Integrated Microbial Genomes
8082264457: Agrobacterium fabrum 1D1478 organism-specific Integrated Microbial Genomes
8023948484: Agrobacterium fabrum N33/94 organism-specific Integrated Microbial Genomes
8003608388: Agrobacterium fabrum 12D13 organism-specific Integrated Microbial Genomes
8003603048: Agrobacterium fabrum 1D132 organism-specific Integrated Microbial Genomes
2933594066: Agrobacterium fabrum 35/80 organism-specific Integrated Microbial Genomes
8003597438: Agrobacterium fabrum 2788 organism-specific Integrated Microbial Genomes
Agrobacterium fabrum | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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