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Taxonomy browser (Cyanobacteria)

Cyanobacteria

Taxonomy ID: 1117 (for references in articles please use NCBI:txid1117)
Scientific name: Cyanobacteria
Genbank common name: blue-green algae
Inherited blast name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: Cyanophyceae
synonym: Cyanophycota
synonym: Cyanophyta
synonym: Oxygenic photosynthetic bacteria
synonym: Oxyphotobacteria
common name: blue-green bacteria
common name: cyanophytes
blast name: cyanobacteria
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 447,459 3
Nucleotide EST 22 -
Nucleotide GSS 1,012 -
Protein 4,074,644 4,205
Structure 1,303 4
Genome 329 -
Popset 2,651 1,162
Conserved Domains 329 302
GEO Datasets 2,885 7
PubMed Central 23,003 7,935
Gene 351,485 -
SRA Experiments 3,106 40
GEO Profiles 68,829 -
Protein Clusters 41,192 349
Identical Protein Groups 2,396,840 4,204
Bio Project 808 5
Bio Sample 3,950 75
Bio Systems 17,224 -
Assembly 1,488 -
Probe 3,754 -
PubChem BioAssay 63 -
Taxonomy 20,540 1

Comments and References:

Reference to PubMed documentGaget V et al. (2011)
Gaget, V., Gribaldo, S., and Tandeau de Marsac, N. "An rpoB signature sequence provides unique resolution for the molecular typing of cyanobacteria." Int. J. Syst. Evol. Microbiol. (2011) 61:170-183.

Reference to PubMed documentLyra C et al. (1997)
Lyra, C., Hantula, J., Vainio, E., Rapala, J., Rouhiainen, L., and Sivonen, K. "Characterization of cyanobacteria by SDS-PAGE of whole-cell proteins and PCR/RFLP of the 16S rRNA gene." Arch. Microbiol. (1997) 168:176-184.

Reference to PubMed documentOren A (2004)
Oren, A. "A proposal for further integration of the cyanobacteria under the Bacteriological Code." Int. J. Syst. Evol. Microbiol. (2004) 54:1895-1902.

Reference to PubMed documentOren A & Garrity GM (2014)
Oren, A., and Garrity, G.M. "Proposal to change General Consideration 5 and Principle 2 of the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2014) 64:309-310. [Erratum: Int. J. Syst. Evol. Microbiol. (2014) 64:2508.]

Reference to PubMed documentPinevich AV (2015)
Pinevich, A.V. "Proposal to consistently apply the International Code of Nomenclature of Prokaryotes (ICNP) to names of the oxygenic photosynthetic bacteria (cyanobacteria), including those validly published under the International Code of Botanical Nomenclature (ICBN)/International Code of Nomenclature for algae, fungi and plants (ICN), and proposal to change Principle 2 of the ICNP." Int. J. Syst. Evol. Microbiol. (2015) 65:1070-1074.

Reference to PubMed documentSoo RM et al. (2014)
Soo, R.M., Skennerton, C.T., Sekiguchi, Y., Imelfort, M., Paech, S.J., Dennis, P.G., Steen, J.A., Parks, D.H., Tyson, G.W., and Hugenholtz, P. "An expanded genomic representation of the phylum cyanobacteria." Genome Biol. Evol. (2014) 6:1031-1045.

Reference to PubMed documentWoese CR et al. (1985)
Woese, C.R., Stackebrandt, E., Macke, T.J., and Fox, G.E. "A phylogenetic definition of the major eubacterial taxa." Syst. Appl. Microbiol. (1985) 6:143-151.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Cyanobacteria taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
3 records from this provider taxonomy/phylogenetic Index Nominum Algarum
14 records from this provider organism-specific Integrated Microbial Genomes
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Cyanobacteria taxonomy/phylogenetic Lifemap
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
Cyanobacteria sp. (taxon passport) culture/stock collections StrainInfo
ToL taxonomy/phylogenetic Tree of Life
Cyanobacteria Stanier ex Cavalier-Smith, 2002 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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