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Taxonomy browser (Rattus norvegicus)

Rattus norvegicus

Taxonomy ID: 10116 (for references in articles please use NCBI:txid10116)
Scientific name: Rattus norvegicus
Genbank common name: Norway rat
Inherited blast name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name: brown rat
common name: rat
common name: rats
includes: Buffalo rat
includes: Rattus PC12 clone IS
includes: Sprague-Dawley rat
includes: Wistar rats
includes: laboratory rat
includes: zitter rats
equivalent name: Rattus sp. strain Wistar
Lineage( abbreviated )
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 336,312 336,310
Nucleotide EST 1,103,594 1,103,594
Nucleotide GSS 867,131 867,131
Protein 152,037 152,037
Structure 2,810 2,810
Genome 1 1
Popset 217 217
Conserved Domains 3 3
GEO Datasets 92,073 92,066
UniGene 67,297 67,297
PubMed Central 10,181 10,181
Gene 102,409 102,409
HomoloGene 18,871 18,871
SRA Experiments 16,205 15,933
GEO Profiles 6,827,762 6,827,762
Protein Clusters 13 13
Identical Protein Groups 85,704 85,704
Bio Project 3,098 3,093
Bio Sample 75,766 75,504
Bio Systems 2,009 2,009
Assembly 15 15
Clone DB 482,767 482,767
Probe 330,205 330,205
PubChem BioAssay 141,015 141,015
Taxonomy 2 2
Taxonomy 2 1

Comments and References:

Note: The laboratory rat Rattus norvegicus is occassionally misidentified as Rattus rattus. A certain number of the R. rattus sequence records are therefore likely to be from R. norvegicus.

Sequence entries that are identified only by the English vernacular name "rats" are classified with "Rattus sp." Many of these entries are journal-scanned sequences from articles in which the scientific name of the organism does not appear (this is an editorial policy for model organisms in some journals). Most of these sequences are likely to be from Rattus norvegicus. If you want to make sure that you have all of the records for R. norvergicus, you should also retrieve the records for Rattus rattus and Rattus sp.


Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Rattus norvegicus
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST FINISHING PCR PRIMERWALK RT-PCR SHOTGUN WGS ALL
ABC - Agencourt Bioscience Corporation
- 143,327 - - - - 155,599 5,584,764 5,883,690
BCM - Baylor College of Medicine
- - - - - - 15,144,234 4,392,883 19,537,117
BI - Broad Insititute
- - - - - - 4,608 - 4,608
CRA - Celera Genomics
- - - - - - - 23,772,713 23,772,713
GBF - German Research Centre for Biotechnology
- - - - - - 40,854 - 40,854
HPGC - Albert Einstein College of Medicine
- - 5,772 - - - 19,527 - 25,299
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- - - - - - 83,500 119,257 202,757
MPIMG - Max Planck Institute for Molecular Genetics
- - - - - - - 158,061 158,061
NISC - NIH Intramural Sequencing Center
- - - - - - 492,073 - 492,073
PSU - Penn State College of Medicine
- - - 69 - - - - 69
SC - The Sanger Center
- - - 121 450 - - - 571
TIGR - The Institute for Genome Research
680 - - - - - 361,862 - 362,542
UIACBCB - University of Iowa Center for Bioinformatics and Computation Biology (UIACBCB)
- 347,282 - - - - - - 347,282
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 134 - - - 16,792 - 16,926
UUGC - University of Utah Genome Center
- - - - - - - 1,049,963 1,049,963
WU-LCG - Washington University Laboratory for Computational Genomics
- - - - - 911 - - 911
Totals per type
680 490,609 5,906 190 450 911 16,319,049 35,077,641 51,895,436

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rattus norvegicus taxonomy/phylogenetic Animal Diversity Web
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Rattus norvegicus taxonomy/phylogenetic Barcodes of Life
Rattus norvegicus taxonomy/phylogenetic CalPhotos
8 records from this provider supplemental materials Dryad Digital Repository
Rattus norvegicus (Berkenhout, 1769) taxonomy/phylogenetic Encyclopedia of life
10 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639431600: Rattus norvegicus BN/SsNHsdMCW organism-specific Integrated Microbial Genomes
Rattus norvegicus (Berkenhout, 1769) taxonomy/phylogenetic Integrated Taxonomic Information System
Rattus norvegicus taxonomy/phylogenetic Lifemap
Rattus norvegicus Berkenhout 1769 taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
3 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
rat strains (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Rattus norvegicus taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
7 records from this provider organism-specific diArk - a resource for eukaryotic genome research
2 records from provider taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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