Taxonomy browser (Rattus norvegicus)

Genbank common name: Norway rat
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:

common name(s) brown rat, rat, rats

Lineage( full ): cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus

Entrez records
Database name	Subtree links	Direct links
Nucleotide	2,309,378	2,309,376
Protein	162,619	162,619
Structure	3,689	3,689
Genome	1	1
Popset	293	293
Conserved Domains	5	5
GEO Datasets	132,756	132,734
PubMed Central	16,592	16,592
Gene	113,021	113,021
HomoloGene	18,871	18,871
SRA Experiments	83,432	83,060
GEO Profiles	6,827,762	6,827,762
Protein Clusters	13	13
Identical Protein Groups	98,215	98,215
BioProject	5,786	5,777
BioSample	136,539	136,215
Assembly	20	20
PubChem BioAssay	192,059	192,059
Taxonomy	2	1

Comments and References:

Note: The laboratory rat Rattus norvegicus is occassionally misidentified as Rattus rattus. A certain number of the R. rattus sequence records are therefore likely to be from R. norvegicus.

Sequence entries that are identified only by the English vernacular name "rats" are classified with "Rattus sp." Many of these entries are journal-scanned sequences from articles in which the scientific name of the organism does not appear (this is an editorial policy for model organisms in some journals). Most of these sequences are likely to be from Rattus norvegicus. If you want to make sure that you have all of the records for R. norvergicus, you should also retrieve the records for Rattus rattus and Rattus sp.

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Rattus norvegicus

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Rattus norvegicus	taxonomy/phylogenetic	Animal Diversity Web
2 records from this provider	taxonomy/phylogenetic	Arctos Specimen Database
DNA barcoding : Rattus norvegicus	taxonomy/phylogenetic	Barcodes of Life
Rattus norvegicus	taxonomy/phylogenetic	CalPhotos
21 records from this provider	supplemental materials	Dryad Digital Repository
Rattus norvegicus (Berkenhout, 1769)	taxonomy/phylogenetic	Encyclopedia of life
10 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
639431600: Rattus norvegicus BN/SsNHsdMCW	organism-specific	Integrated Microbial Genomes
Rattus norvegicus (Berkenhout, 1769)	taxonomy/phylogenetic	Integrated Taxonomic Information System
Rattus norvegicus	taxonomy/phylogenetic	Lifemap
Rattus norvegicus Berkenhout 1769	taxonomy/phylogenetic	Mammal Species of the World
MamTex	taxonomy/phylogenetic	Mammals of Texas
3 records from this provider	taxonomy/phylogenetic	NCBI taxonomy bookmarks
rat strains (BAC proposal)	taxonomy/phylogenetic	NHGRI genome proposal white papers
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Rattus norvegicus	taxonomy/phylogenetic	TreeBase
UCSCgb	sequence screening/similarity/alignment	UCSC Genome Browser
2 records from this provider	organism-specific	WebScipio - eukaryotic gene identification
2 records from this provider	taxonomy/phylogenetic	World Register of Marine Species
7 records from this provider	organism-specific	diArk - a resource for eukaryotic genome research
2 records from provider	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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