Taxonomy browser (Mus musculus)

Genbank common name: house mouse
NCBI BLAST name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:

common name(s) mouse

Lineage( full ): cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus

Entrez records
Database name	Subtree links	Direct links
Nucleotide	11,108,687	10,498,415
Protein	365,023	357,020
Structure	8,641	8,637
Genome	1	1
Popset	8,670	8,420
Conserved Domains	24	24
GEO Datasets	2,076,714	2,075,738
PubMed Central	39,311	38,917
Gene	241,540	241,445
HomoloGene	19,032	19,032
SRA Experiments	2,184,927	2,173,231
GEO Profiles	50,177,624	50,177,624
Protein Clusters	13	13
Identical Protein Groups	213,819	211,178
BioProject	71,387	71,085
BioSample	2,202,138	2,190,972
Assembly	97	85
PubChem BioAssay	213,937	213,933
Taxonomy	17	1

Comments and References:

image:Mus musculus

Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Mus musculus

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Mus musculus	taxonomy/phylogenetic	Animal Diversity Web
2 records from this provider	taxonomy/phylogenetic	AnimalBase
Mus musculus taxonomy	taxonomy/phylogenetic	Arctos Specimen Database
DNA barcoding : Mus musculus	taxonomy/phylogenetic	Barcodes of Life
DigiMorph	images	Digital Morphology
159 records from this provider	supplemental materials	Dryad Digital Repository
Mus musculus Linnaeus, 1758	taxonomy/phylogenetic	Encyclopedia of life
22 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
639370800: Mus musculus C57BL/6J	organism-specific	Integrated Microbial Genomes
Mus musculus Linnaeus, 1758	taxonomy/phylogenetic	Integrated Taxonomic Information System
Mus musculus	taxonomy/phylogenetic	Lifemap
Mus musculus Linnaeus 1758	taxonomy/phylogenetic	Mammal Species of the World
2 records from this provider	taxonomy/phylogenetic	NCBI taxonomy bookmarks
2 records from this provider	taxonomy/phylogenetic	NHGRI genome proposal white papers
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
UCSCgb	sequence screening/similarity/alignment	UCSC Genome Browser
2 records from this provider	organism-specific	WebScipio - eukaryotic gene identification
Mus musculus Linnaeus, 1758	taxonomy/phylogenetic	World Register of Marine Species
17 records from provider	organism-specific	diArk - a resource for eukaryotic genome research

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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